SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156521

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene156521
ACAAGCAGATCGAGGAACTAGTTGAGGCCATCGTTTGGCCCATGAAGGAAGCTGAGCGATTCAAGAAGATTGGCATCAAGGCACCCAAGGGTGCCCTCATGTATGGCCCTCCTGGTACTGGCAAGACCCTCCTGGCAAGGGCCTGTGCGGCTCAGACAGATGCCACGTTCCTGAAGCTAGCAGGGCCCCAACTTGTTCAGATGTTT

Ace file of the UniGene sp_v3.0_unigene156521

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome regulatory particle subunit Rpt5 n=5 Tax=Sordariomycetes RepID=A4QT56_MAGO7	-	-	1.0e-31	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Putative 26S proteasome AAA-ATPase subunit RPT6a	-	-	3.087e-08	-

Source	Gene names
Sma3	At1g09100; At1g53750; At3g05530; At3g05530/F22F7.1; At5g19990; At5g20000; AtSUG1; BrTBP; CHLREDRAFT_188404; CHLREDRAFT_24536; DGRPT6a; F22F7.1; F22G10.2; GSVIVT00019753001; GSVIVT00022719001; GSVIVT00032563001; GSVIVT00033984001; GSVIVT00034542001; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G05530.1	RPT5A, ATS6A.2 regulatory particle triple-A ATPase 5A chr3:1603540-1605993 FORWARD LENGTH=424	6.0e-32	79%
RefSeq	Arabidopsis thaliana	NP_187204.1	regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]	8.0e-32	79%
RefSeq	Populus trichocarpa	XP_002330164.1	predicted protein [Populus trichocarpa]	8.0e-32	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX40

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 68 - 424

Fln protein: KQIEELVEAIVWPMKEAERFKKIGIKAPKGALMYGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMF

Protein Length: 69

Fln nts: ACAAGCAGATCGAGGAACTAGTTGAGGCCATCGTTTGGCCCATGAAGGAAGCTGAGCGATTCAAGAAGATTGGCATCAAGGCACCCAAGGGTGCCCTCATGTATGGCCCTCCTGGTACTGGCAAGACCCTCCTGGCAAGGGCCTGTGCGGCTCAGACAGATGCCACGTTCCTGAAGCTAGCAGGGCCCCAACTTGTTCAGATGTTT

Fln Alignment:

HLKU4M004JIQCL___KQIEELVEAIVWPMKEAERFKKIGIKAPKGALMYGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMF
A9NX40________________KQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain