SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156238

Length: 537 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene156238
GCCGGAGAACTACCAGATGAAGTACTACATGTATCACGGTCTCTCGTGGCCTCAGGTCTCCTATGTAGCCGAGGACGAGACCGGCAACATAGTAGGCTACGTGCTGGCCAAGATGGAAGACGATAACAACGACGACAAAGTGCCACATGGTCACATTACCTCTCTAGCCGTCAAGAGAAGCTACAGACGTCTCGGTATTGCTCAGAAACTTATGGAGCAAGCGTCGAGAGCTATGGTAGAGAACTTTAATGCTCAGTATGTTTCTCTTCACGTGCGTGTGAGCAACAGAGCCGCTCTGCATTTGTACAAGGACACGCTCAAGTTCAACATAAGCGATGTAGAGCCCAAGTACTATGCTGATGGAGAAGACGCCTACGCCATGAAGCGTGACCTCAAATATCTAGTCGAGAAGTTCGGACGAGTTTTAAACAATAATGACAAAGACAAAGTCTTCTATAGATATGACGATGTTTAAACTATGTTTTTATGGTAATTCCGGATCATTTTAGCACTCAGACTCGACCCAATAAAGATTAC

Ace file of the UniGene sp_v3.0_unigene156238 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	N-alpha-acetyltransferase 10, NatA catalytic subunit n=10 Tax=Eutheria RepID=NAA10_MOUSE	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Silencing group B protein	-	-	1.628e-11	-

Source	Gene names
Sma3	At5g13780; CHLREDRAFT_95444; GSVIVT00028699001; H0410G08.10; MICPUCDRAFT_20989; MICPUN_73117; MXE10.5; NAT1; OSJNBa0043L09.27; OSTLU_7944; Os04g0635800; OsI_17581; OsI_17596; OsJ_16314; Ot06g04790; PHATRDRAFT_51345; PHYPADRAFT_116602; PHYPADRAFT_197972; P

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	Aluminium resistance	IPR009651	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13780.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein chr5:4447610-4448603 REVERSE LENGTH=192	65%
RefSeq	Arabidopsis thaliana	NP_196882.1	peptide alpha-N-acetyltransferase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002314058.1	silencing group B protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSV4

Fln msg: your sequence is shorter than subject: 158 - 192

Fln protein: PENYQMKYYMYHGLSWPQVSYVAEDETGNIVGYVLAKMEDDNNDDKVPHGHITSLAVKRSYRRLGIAQKLMEQASRAMVENFNAQYVSLHVRVSNRAALHLYKDTLKFNISDVEPKYYADGEDAYAMKRDLKYLVEKFGRVLNNNDKDKVFYRYDDV*

Protein Length: 159

Fln nts: GCCGGAGAACTACCAGATGAAGTACTACATGTATCACGGTCTCTCGTGGCCTCAGGTCTCCTATGTAGCCGAGGACGAGACCGGCAACATAGTAGGCTACGTGCTGGCCAAGATGGAAGACGATAACAACGACGACAAAGTGCCACATGGTCACATTACCTCTCTAGCCGTCAAGAGAAGCTACAGACGTCTCGGTATTGCTCAGAAACTTATGGAGCAAGCGTCGAGAGCTATGGTAGAGAACTTTAATGCTCAGTATGTTTCTCTTCACGTGCGTGTGAGCAACAGAGCCGCTCTGCATTTGTACAAGGACACGCTCAAGTTCAACATAAGCGATGTAGAGCCCAAGTACTATGCTGATGGAGAAGACGCCTACGCCATGAAGCGTGACCTCAAATATCTAGTCGAGAAGTTCGGACGAGTTTTAAACAATAATGACAAAGACAAAGTCTTCTATAGATATGACGATGTTTAA___ACTATGTTTTTATGGTAATTCCGGATCATTTTAGCACTCAGACTCGACCCAATAAAGATTAC

Fln Alignment:

HLKU4M004H2MN0___PENYQMKYYMYHGLSWPQVSYVAEDETGNIVGYVLAKMEDDNNDDKVPHGHITSLAVKRSYRRLGIAQKLMEQASRAMVENFNAQYVSLHVRVSNRAALHLYKDTLKFNISDVEPKYYADGEDAYAMKRDLK
A9NSV4________________PENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEESTEC---HGHITSLAVLRTHRKLGLATKLMTAAQKAMHEVFGAEYVSLHVRKSNRAAFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain