SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155880

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene155880
AAATATTTCTTGATCGAGTAATATGAGTAAGATCAGTTCTGAAGCCCTTAAGAAGGCTATTGCCGACATGCTCGCCAACAGAAAGGCCAGAAAGTTCACTGAAACTGTTGAACTTCAAATCGGTTTGAGAGACTACGATCCCGAAAAGGATAAGCGTTTCAACGGTTCCATCAGACTCCCCAACGTCCCTGCCCCCAACAGAAAGATCGGACTTATCGGTACTGCCGTTACACTGTGATCAAGCTAAG

Ace file of the UniGene sp_v3.0_unigene155880

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	L1P family of ribosomal proteins containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22UX9_TETTH	-	-	7.0e-18	70%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Ribosomal protein L1	-	-	9.227e-25	-

Source	Gene names
Sma3	At5g22440; MWD9.24; OJ1150_A11.31; Os08g0558000; Os08g0558800; OsI_30253; OsI_30261; OsJ_28264; OsJ_28271; PHYPADRAFT_110650; RCOM_1281590; RCOM_1281610; RPL10AC; r10a;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G22440.1	Ribosomal protein L1p/L10e family chr5:7435328-7436486 REVERSE LENGTH=217	2.0e-18	53%
RefSeq	Arabidopsis thaliana	NP_001078612.1	60S ribosomal protein L10a-3 [Arabidopsis thaliana]	3.0e-18	53%
RefSeq	Populus trichocarpa	XP_002328253.1	predicted protein [Populus trichocarpa]	1.0e-17	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNS9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 72 - 216

Fln protein: MSKISSEALKKAIADMLANRKARKFTETVELQIGLRDYDPEKDKRFNGSIRLPNVPAPNRKIGLIGTAVTL*

Protein Length: 73

Fln nts: AAATATTTCTTGATCGAGTAAT_-_ATGAGTAAGATCAGTTCTGAAGCCCTTAAGAAGGCTATTGCCGACATGCTCGCCAACAGAAAGGCCAGAAAGTTCACTGAAACTGTTGAACTTCAAATCGGTTTGAGAGACTACGATCCCGAAAAGGATAAGCGTTTCAACGGTTCCATCAGACTCCCCAACGTCCCTGCCCCCAACAGAAAGATCGGACTTATCGGTACTGCCGTTACACTGTGATCAAGCTAAG

Fln Alignment:

HLKU4M004I76N9___EALKKAIADMLAN--RKARKFTETVELQIGLRDYDPEKDKRFNGSIRLPNVPAPNRKIGLIGTA
A9NNS9________________DVLREAISQVMADSKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain