SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155574

Length: 341 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene155574
GTGTCGTCCACCCACGGTGACGTGCAGCAGAAGGAGCGCGACGTCATCCTCAACGAGTTCCGCACGGGCTCGTCGCGTGTGCTCATCACCACCGACCTGCTCGCCCGTGGTATCGACGTGCAGCAGGTGTCGCTGGTGATCAACTACGACCTGCCCCGCAACCTCGAGAACTACATCCACCGCATCGGTCGCTCGGGCCGCTTTGGTCGCAAGGGTGTTGCGATCAACTTCGTCACCTCCGAGGACGTCCGCCTCCTCCGGGAGCTCGAGAACTTCTACAACACCCAGATCGACGAAATGCCGGCGCACGTTGCCGATCTCATCTAAACGGAGGACGTCGC

Ace file of the UniGene sp_v3.0_unigene155574 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: eukaryotic translation initiation factor 4A-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBC21A	-	-	9.80909e-45	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Dead box ATP-dependent RNA helicase, putative	-	-	1.736e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	5.795e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	5.795e-11	%
Sma3	Lipopolysaccharide biosynthesis	00540	5.795e-11	%
Sma3	Folate biosynthesis	00790	5.795e-11	%
Sma3	Metabolic pathways	01100	5.795e-11	%

Source	Gene names
Sma3	AT1G54270; AT3G13920; At1g51380; At1g54270; At1g55150; At1g72730; At3g13920; At3g19760; B1131G07.20; CHLREDRAFT_188942; CHLREDRAFT_608; DH1; EIF4A; EIF4A3; F11M15.24; F20D21.9; F20D21_52; F28P22.8; F5D21.11; F7A10.10; GSVIVT00015999001; GSVIVT00016530001;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19760.1	EIF4A-III eukaryotic initiation factor 4A-III chr3:6863790-6866242 FORWARD LENGTH=408	77%
RefSeq	Arabidopsis thaliana	NP_188610.1	DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002337398.1	predicted protein, partial [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMF4

Fln msg: your sequence is shorter than subject: 109 - 286

Fln protein: VSSTHGDVQQKERDVILNEFRTGSSRVLITTDLLARGIDVQQVSLVINYDLPRNLENYIHRIGRSGRFGRKGVAINFVTSEDVRLLRELENFYNTQIDEMPAHVADLI*

Protein Length: 110

Fln nts: GTGTCGTCCACCCACGGTGACGTGCAGCAGAAGGAGCGCGACGTCATCCTCAACGAGTTCCGCACGGGCTCGTCGCGTGTGCTCATCACCACCGACCTGCTCGCCCGTGGTATCGACGTGCAGCAGGTGTCGCTGGTGATCAACTACGACCTGCCCCGCAACCTCGAGAACTACATCCACCGCATCGGTCGCTCGGGCCGCTTTGGTCGCAAGGGTGTTGCGATCAACTTCGTCACCTCCGAGGACGTCCGCCTCCTCCGGGAGCTCGAGAACTTCTACAACACCCAGATCGACGAAATGCCGGCGCACGTTGCCGATCTCATCTAA___ACGGAGGACGTCGC

Fln Alignment:

HLKU4M004H7SU7___VSSTHGDVQQKERDVILNEFRTGSSRVLITTDLLARGIDVQQVSLVINYDLPRNLENYIHRIGRSGRFGRKGVAINFVTSEDVRLLRELENFYNTQIDEMPAHVADLI
B8LMF4________________VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQDIQRFYNVVVEELPNNVADLI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain