SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155313

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene155313
CACTGTGTCTATCACATCTCCTCTAGATGTGTGTTTTGGAGAAGTAGGAGCTCCTCTTCCTTGCATTGAGGTAAAACTTGTATCCGTTCCCGATATGGATTATCTCGTAACTGACAATCCCCCACGAGGAGAAATTTGGGTACGAGGTCCAAATGTGAGCGCTGGGTATTATAAAAATGAC

Ace file of the UniGene sp_v3.0_unigene155313

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP-binding protein, putative (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00Y52_OSTTA	-	-	2.0e-13	63%
FL-Next	sp=Long chain acyl-CoA synthetase 6, peroxisomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	AMP-binding protein, putative (ISS)	-	-	5.848e-06	-

Source	Gene names
Sma3	OSTLU_26758; Ot12g01080;

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G05970.1	LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 chr3:1786510-1791746 REVERSE LENGTH=701	4.0e-12	59%
RefSeq	Arabidopsis thaliana	NP_566265.1	long-chain acyl-CoA synthetase 6 [Arabidopsis thaliana]	5.0e-12	59%
RefSeq	Populus trichocarpa	XP_002302236.1	predicted protein [Populus trichocarpa]	1.0e-12	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LPS1

Fln msg: Distance to subject end: 185 aas, your sequence is shorter than subject: 60 - 701

Fln protein: TVSITSPLDVCFGEVGAPLPCIEVKLVSVPDMDYLVTDNPPRGEIWVRGPNVSAGYYKND

Protein Length: 61

Fln nts: CACTGTGTCTATCACATCTCCTCTAGATGTGTGTTTTGGAGAAGTAGGAGCTCCTCTTCCTTGCATTGAGGTAAAACTTGTATCCGTTCCCGATATGGATTATCTCGTAACTGACAATCCCCCACGAGGAGAAATTTGGGTACGAGGTCCAAATGTGAGCGCTGGGTATTATAAAAATGAC

Fln Alignment:

HLKU4M004JUSQO___GEVGAPLPCIEVKLVSVPDMDYLVTDNP-PRGEIWVRGPNVSAGYYKND
Q8LPS1________________GHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain