SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155247

Length: 88 nt

UniGene Fasta

>sp_v3.0_unigene155247
GGTGAGATTTTCATCCATCAGGCCATTGAGACTATCGAGTTCGTACTGGGCATGGTGTCGAATACTGCCTCTTATCTGCGTCTGTGGG

Ace file of the UniGene sp_v3.0_unigene155247

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar proton translocating ATPase A subunit, putative [Phytophthora infestans]	-	-	3.0e-07	89%
FL-Next	tr=Vtype hatpase putative; Albugo laibachii Nc14.	-	-	0.0	96%

Source	Gene names
Sma3	AT4g39080; At2g21410; At4g39080; CM0216.490.nc; F19H22.180; GSVIVT00035934001; MICPUCDRAFT_16972; OSTLU_46292; Ot08g03920; PHATRDRAFT_28794; PHYPADRAFT_134945; PI49.0180; THAPSDRAFT_40728;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F0WYA2

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 29 - 882

Fln protein: GEIFIHQAIETIEFVLGMVSNTASYLRLW

Protein Length: 30

Fln nts: GGTGAGATTTTCATCCATCAGGCCATTGAGACTATCGAGTTCGTACTGGGCATGGTGTCGAATACTGCCTCTTATCTGCGTCTGTGGG

Fln Alignment:

HLKU4M004JD21H___GEIFIHQAIETIEFVLGMVSNTASYLRLW
F0WYA2________________GEMFIHQAIETIEFVLGMVSNTASYLRLW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain