SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154776

Length: 117 nt

UniGene Fasta

>sp_v3.0_unigene154776
CAAAAACAAACAAACAACTCAACCCACAATGCAAATTTTCGTGAAGACTTTGACTGGCAAAACCATCACCTTGGAAGTTGAGCCCTCTGACACCATTGAAAACGTCAAGGCCAAGAT

Ace file of the UniGene sp_v3.0_unigene154776

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin C variant [Homo sapiens]	-	-	2.0e-08	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	AT5G03240; At1g55060; At2g36170; At4g02890; At4g05050; At4g05320; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; CHLREDRAFT_195594; EgUbi; FUBI1; GSVIVT00035709001; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; LpUBQ; MICPUCDRAFT_1754

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Superoxide dismutase, Nickel-type	IPR014123	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52590.1	UBQ1, EMB2167, ERD16, HAP4 ubiquitin extension protein 1 chr3:19505668-19506681 FORWARD LENGTH=128	2.0e-11	93%
RefSeq	Arabidopsis thaliana	NP_566969.1	60S ribosomal protein L40-2 [Arabidopsis thaliana]	3.0e-11	93%
RefSeq	Populus trichocarpa	XP_002333648.1	predicted protein [Populus trichocarpa]	2.0e-11	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP57

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 29 - 128

Fln protein: MQIFVKTLTGKTITLEVEPSDTIENVKAK

Protein Length: 30

Fln nts: CAAAAACAAACAAACAACTCAACCCACA_-_ATGCAAATTTTCGTGAAGACTTTGACTGGCAAAACCATCACCTTGGAAGTTGAGCCCTCTGACACCATTGAAAACGTCAAGGCCAAGAT

Fln Alignment:

HLKU4M004IHY8W___MQIFVKTLTGKTITLEVEPSDTIENVKAK
B8LP57________________MQIFVKTLTGKTITLEVESSDTIDNVKAK

SSRs (tot: 1)

Start position	End position	Sequence	Length
4	17	AAAC AAAC AAAC AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain