SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154584

Length: 425 nt

UniGene Fasta

>sp_v3.0_unigene154584
TATGTTGGAACTTATCAATCAACTCGATGGTTTCGATGCTCGTGGTAATATTAAAGTTATTATGGCTACCAATCGACCAGACACATTGGATCCAGCGTTGACGCGTCCCGGTCGATTAGATCGAAAGATCGAATTCGGTTTACCCGATCTCGAAGGAAGAACAAATATCTTCCAAATTCACGCGAGAAGTATGAATTGCGATCGAGGAATTCGTTATGAATTGTTAGCTCGATTGTGTCCCAATAGCACTGGTGCGGATATTCGAAGTGTTTGCACAGAAGCTGGAATGTTCGCTATTCGTTCCAGACGAAAGATTGTCACTGAAAAAGACTTCTTGACTGCTATTAACAAAGTTATTAAACAATACGCGAAATTCTCTGCTACTCCTAAGTATATGGTTTATAATTAATCCTTCTTCTCTGCTA

Ace file of the UniGene sp_v3.0_unigene154584

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S protease regulatory subunit 7 [Oryza sativa Indica Group]	-	-	0.0	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Proteasomal ATPase	-	-	3.997e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	9.588e-14	-

Source	Gene names
Sma3	26S proteasome subunit; AT4g29040; At1g09100; At1g45000; At1g45000/F27F5.8; At1g53750; At2g20140; At3g05530; At3g05530/F22F7.1; At4g29040; At5g19990; At5g20000; At5g43010; At5g58290; AtSUG1; BrTBP; CHLREDRAFT_184001; CHLREDRAFT_188404; CHLREDRAFT_24096; C

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G53750.1	RPT1A regulatory particle triple-A 1A chr1:20065921-20068324 REVERSE LENGTH=426	85%
RefSeq	Arabidopsis thaliana	NP_175778.1	regulatory particle triple-A 1A [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002334015.1	predicted protein, partial [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL88

Fln msg: your sequence is shorter than subject: 136 - 425

Fln protein: MLELINQLDGFDARGNIKVIMATNRPDTLDPALTRPGRLDRKIEFGLPDLEGRTNIFQIHARSMNCDRGIRYELLARLCPNSTGADIRSVCTEAGMFAIRSRRKIVTEKDFLTAINKVIKQYAKFSATPKYMVYN*

Protein Length: 137

Fln nts: TATGTTGGAACTTATCAATCAACTCGATGGTTTCGATGCTCGTGGTAATATTAAAGTTATTATGGCTACCAATCGACCAGACACATTGGATCCAGCGTTGACGCGTCCCGGTCGATTAGATCGAAAGATCGAATTCGGTTTACCCGATCTCGAAGGAAGAACAAATATCTTCCAAATTCACGCGAGAAGTATGAATTGCGATCGAGGAATTCGTTATGAATTGTTAGCTCGATTGTGTCCCAATAGCACTGGTGCGGATATTCGAAGTGTTTGCACAGAAGCTGGAATGTTCGCTATTCGTTCCAGACGAAAGATTGTCACTGAAAAAGACTTCTTGACTGCTATTAACAAAGTTATTAAACAATACGCGAAATTCTCTGCTACTCCTAAGTATATGGTTTATAATTAA___TCCTTCTTCTCTGCTA

Fln Alignment:

HLKU4M004I9NFV___MLELINQLDGFDARGNIKVIMATNRPDTLDPALTRPGRLDRKIEFGLPDLEGRTNIFQIHARSMNCDRGIRYELLARLCPNSTGADIRSVCTEAGMFAIRSRRKIVTEKDFLTAINKVIKQYAKFSATPKYMVYN
B8LL88________________MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain