SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154418

Length: 553 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154418
CAGTTGATGGTGATTTGTTCAATTGGGTTGGATGTATTATTGGTCCATTAGGAAGCCCATATGAAGGTGGTGTGTTTAACATCAAGATTTCTTGCCCAACTGAGTATCCATTCAAGCCACCAGAAGTTAAATTCACAACCACTGTCTGGCATCCAAGTGTTAAGACTGAAACAGGGGATATTTGCGCTGATATGCTCAAAGCTCAATGGAAACCTAACATTGAATATTAGATGGGTGTTAACTATTCTTAAATCACTTCTTGAGGAGCCAAGCGTTGAGAGCCCACTCGAGCCTGAAATTGCACAGTTGCTTTCAACTAACCCAGCTGCTTTCAAGAAGAAGGCAGCTGAGATGACAGCTAAGTATGCAAATTAGATATGCTTACAATTGTAGGCATATCTTTCTTCTCTACTTCTATTTCTATCTTTGGATAATCAAAATAGAATAGGAATCAGAGAGAGAATATCTGTACAAGATGAAAGAGCATGCAATGAGGTGTGGTGATTGGGAAAATTCTTCTTAAAATAGTCAAGTAAATTGAACTAAACGAAAC

Ace file of the UniGene sp_v3.0_unigene154418 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=2 Tax=Theileria RepID=Q4UHS2_THEAN	-	-	1.0e-19	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Ubiquitin carrier protein	-	-	2.355e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	1.397e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		1.397e-14	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		1.397e-14	%

Source	Gene names
Sma3	CHLREDRAFT_152525; PHATRDRAFT_30389; UBC1; UBC9; ubc1;

Source	GOs	Term	Type	Identity
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G50870.2	UBC27 ubiquitin-conjugating enzyme 27 chr5:20699626-20700998 REVERSE LENGTH=203	2.0e-21	51%
RefSeq	Arabidopsis thaliana	NP_199900.1	ubiquitin-conjugating enzyme E2 27 [Arabidopsis thaliana]	2.0e-21	51%
RefSeq	Populus trichocarpa	XP_002325556.1	predicted protein [Populus trichocarpa]	3.0e-21	52%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKT1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 92 aas, putative chimeric sequence, your sequence is shorter than subject: 76 - 195

Fln protein: VDGDLFNWVGCIIGPLGSPYEGGVFNIKISCPTEYPFKPPEVKFTTTVWHPSVKTETGDICADMLKAQWKPNIEY*

Protein Length: 77

Fln nts: CAGTTGATGGTGATTTGTTCAATTGGGTTGGATGTATTATTGGTCCATTAGGAAGCCCATATGAAGGTGGTGTGTTTAACATCAAGATTTCTTGCCCAACTGAGTATCCATTCAAGCCACCAGAAGTTAAATTCACAACCACTGTCTGGCATCCAAGTGTTAAGACTGAAACAGGGGATATTTGCGCTGATATGCTCAAAGCTCAATGGAAACCTAACATTGAATATTAG___ATGGGTGTTAACTATTCTTAAATCACTTCTTGAGGAGCCAAGCGTTGAGAGCCCACTCGAGCCTGAAATTGCACAGTTGCTTTCAACTAACCCAGCTGCTTTCAAGAAGAAGGCAGCTGAGATGACAGCTAAGTATGCAAATTAGATATGCTTACAATTGTAGGCATATCTTTCTTCTCTACTTCTATTTCTATCTTTGGATAATCAAAATAGAATAGGAATCAGAGAGAGAATATCTGTACAAGATGAAAGAGCATGCAATGAGGTGTGGTGATTGGGAAAATTCTTCTTAAAATAGTCAAGTAAATTGAACTAAACGAAAC

Fln Alignment:

HLKU4M004JCPN6___DGDLFNWVGCIIGPLGSPYEGGVFNIKISCPTEYPFKPPEVKFTTTVWHPSVKTETGDICADMLKAQWKP
A9NKT1________________DSDLAHLCGTIAGPMGTPYEGGLFQIDIRLPAAYPFEPPKMQFMTKVWHPNISSQNGAICLDILKDQWSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain