SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154314

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene154314
TCAAGTGAAGAAGCGCATTGAACTTGCAGGTGGACGAGTTCTTGGTGGGCGGGTGCTTGGCCAATTGGCGGTGTCGCGCGCCCTTGGCGACTTCGATTTCAAATCCCCCCTCAATGGGGCGAAATCCGATTTTGTATCTTCCGTTCCAGCTGTGCGCCATATCACCTTGACGCATGAGGATAAATTCGTGATCTTGGCTTGCGATGGAGTGTGGGACGTGCTGTCGTACCAGGAGGCGACGGAGATCGTGCATTGGGCCGTGCGTCGCCTCAGGACAGCCGAAGAAGCCGCGCAGATTTTGGTGCAATCAGCCCTTAGGAAGGGATCTACCGACAATCTGACCGCTATCGTTATCTACTTGCGTTGGACTGGTGATCACCAAACGACAGGCTCCAATAT

Ace file of the UniGene sp_v3.0_unigene154314

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase-2C n=1 Tax=Mesembryanthemum crystallinum RepID=O82469_MESCR	-	-	6.0e-19	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Gene names
Sma3	GSVIVT00028179001; VITISV_026263;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62260.2	Protein phosphatase 2C family protein chr3:23038516-23040391 REVERSE LENGTH=384	5.0e-22	47%
RefSeq	Arabidopsis thaliana	NP_191785.1	putative protein phosphatase 2C 49 [Arabidopsis thaliana]	6.0e-22	47%
RefSeq	Populus trichocarpa	XP_002320954.1	predicted protein [Populus trichocarpa]	7.0e-21	46%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2D9

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 132 - 306

Fln protein: QVKKRIELAGGRVLGGRVLGQLAVSRALGDFDFKSPLNGAKSDFVSSVPAVRHITLTHEDKFVILACDGVWDVLSYQEATEIVHWAVRRLRTAEEAAQILVQSALRKGSTDNLTAIVIYLRWTGDHQTTGSN

Protein Length: 133

Fln nts: TCAAGTGAAGAAGCGCATTGAACTTGCAGGTGGACGAGTTCTTGGTGGGCGGGTGCTTGGCCAATTGGCGGTGTCGCGCGCCCTTGGCGACTTCGATTTCAAATCCCCCCTCAATGGGGCGAAATCCGATTTTGTATCTTCCGTTCCAGCTGTGCGCCATATCACCTTGACGCATGAGGATAAATTCGTGATCTTGGCTTGCGATGGAGTGTGGGACGTGCTGTCGTACCAGGAGGCGACGGAGATCGTGCATTGGGCCGTGCGTCGCCTCAGGACAGCCGAAGAAGCCGCGCAGATTTTGGTGCAATCAGCCCTTAGGAAGGGATCTACCGACAATCTGACCGCTATCGTTATCTACTTGCGTTGGACTGGTGATCACCAAACGACAGGCTCCAATAT

Fln Alignment:

HLKU4M004H2DHQ___KKRIELAXXXXXXXXXXXQLAVSRALGDFDFKSPLNGAKSDFVSSVPAVRHITLTHEDKFVILACDGVWDVLSYQEATEIVHWAVRRLRTAEEAAQILVQSALRKGSTDNLTAIVI
A9P2D9________________RKRIESLGGFVEDVYLNGELGVSRALGDWHLKGR-GAVYLSPLSAEPEVQELELSEEDEFLIIASDGLWDVVSNESAVGIARRELMSNNDPDSCCRALVTEALRKHSVDNLTVVLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain