SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154222

Length: 158 nt

UniGene Fasta

>sp_v3.0_unigene154222
GTCAAGCGTATTTCCACTTACATCTACGATGACTCCAGAGCTGTGTTGAAGAGCTTCTTGGAGAACGTTGTCAGAGACGCTACAACCTACACAGAGCATGCTAAGAGAAAGACTGTCACTGCTCTTGATGTCGTTTATGCCCTTAAGAGACAAGGCAG

Ace file of the UniGene sp_v3.0_unigene154222

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H4, major n=31 Tax=Oligohymenophorea RepID=H41_TETPY	-	-	2.0e-18	88%
FL-Next	sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	78%
Sma3	Histone H4	-	-	6.385e-07	-

Source	Gene names
Sma3	ABE7; AT1G07820; At1g07660; At1g07820; At2g28740; At3g45930; At3g46320; At3g53730; At5g59690; At5g59970; CHLREDRAFT_100020; CHLREDRAFT_100611; CHLREDRAFT_100662; CHLREDRAFT_106054; CHLREDRAFT_110341; CHLREDRAFT_110527; CHLREDRAFT_112470; CHLREDRAFT_112559

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	actin cytoskeleton	GO:0015629	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H4	IPR001951	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59970.1	Histone superfamily protein chr5:24146352-24146663 REVERSE LENGTH=103	5.0e-23	78%
RefSeq	Arabidopsis thaliana	NP_001077477.1	histone H4 [Arabidopsis thaliana]	4.0e-23	78%
RefSeq	Populus trichocarpa	XP_002310853.1	histone H4 [Populus trichocarpa]	6.0e-23	78%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q3ZDJ6

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 52 - 103

Fln protein: VKRISTYIYDDSRAVLKSFLENVVRDATTYTEHAKRKTVTALDVVYALKRQG

Protein Length: 53

Fln nts: GTCAAGCGTATTTCCACTTACATCTACGATGACTCCAGAGCTGTGTTGAAGAGCTTCTTGGAGAACGTTGTCAGAGACGCTACAACCTACACAGAGCATGCTAAGAGAAAGACTGTCACTGCTCTTGATGTCGTTTATGCCCTTAAGAGACAAGGCAG

Fln Alignment:

HLKU4M004IJXTY___VKRISTYIYDDSRAVLKSFLENVVRDATTYTEHAKRKTVTALDVVYALKRQG
Q3ZDJ6________________VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain