SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153881

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene153881
CCTAAAGGTATTGATAACAGAATGCGTCGAAAGTTTAAGGGAATGACTCGCATGCCTAAGATCGGTTGCGGAAGTGATAAATCTACAAAATTCCTTTTGCCTAACGGATTCAAGAAATTCAGAGTCTCCAACGTTGCTGAACTTGAACTCCTTCTTATGCATAATCGATCTTTTGCTGCTGAGATTGCCCACAAC

Ace file of the UniGene sp_v3.0_unigene153881

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L32 n=1 Tax=Postia placenta Mad-698-R RepID=B8PMB2_POSPM	-	-	5.0e-21	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	60S ribosomal protein L32	-	-	1.887e-07	-

Source	Gene names
Sma3	At4g18100; At5g46430; CHLREDRAFT_191758; F15J5.70; GSVIVT00003384001; GSVIVT00004884001; K11I1.2; MICPUCDRAFT_49537; MICPUN_91456; OJ1191_A10.105; OSTLU_86947; Os08g0524600; Os09g0501200; Os09g0501700; Os09g0502000; OsI_29957; OsI_31922; OsI_31924; OsI_31

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L32e	IPR001515	-	0.0	-
Sma3	Ribosomal protein L32e, conserved site	IPR018263	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G46430.1	Ribosomal protein L32e chr5:18833429-18834409 FORWARD LENGTH=133	1.0e-28	70%
RefSeq	Arabidopsis thaliana	NP_851142.1	60S ribosomal protein L32-2 [Arabidopsis thaliana]	2.0e-28	70%
RefSeq	Populus trichocarpa	XP_002303076.1	predicted protein [Populus trichocarpa]	2.0e-28	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMY0

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 65 - 133

Fln protein: PKGIDNRMRRKFKGMTRMPKIGCGSDKSTKFLLPNGFKKFRVSNVAELELLLMHNRSFAAEIAHN

Protein Length: 66

Fln nts: CCTAAAGGTATTGATAACAGAATGCGTCGAAAGTTTAAGGGAATGACTCGCATGCCTAAGATCGGTTGCGGAAGTGATAAATCTACAAAATTCCTTTTGCCTAACGGATTCAAGAAATTCAGAGTCTCCAACGTTGCTGAACTTGAACTCCTTCTTATGCATAATCGATCTTTTGCTGCTGAGATTGCCCACAAC

Fln Alignment:

HLKU4M004IADXT___PKGIDNRMRRKFKGMTRMPKIGCGSDKSTKFLLPNGFKKFRVSNVAELELLLMHNRSFAAEIAHN
A9NMY0________________PKGIDSRVRRKFKGCALMPNIGYGSNKKTRHYLPNGFKKFVVFNVKDLDLLMMHNRTFCAEIAHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain