SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152985

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene152985
AGGAAAGGTAGTTGTCTGTTCCGCTGGAAATGATGGTCCTACTCCGGGGACAGTTTCAAATGTGGCACCATGGATCATAACCGTGGGAGCAAGCAGCATTAATAGACAATTTCCTTCAAGTGCGATTCTTGGAAACAACAAGACATATATAGGAGAAAGCATATCCGAATACCAGTT

Ace file of the UniGene sp_v3.0_unigene152985

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xylem serine proteinase 1, putative n=1 Tax=Ricinus communis RepID=B9SF18_RICCO	-	-	2.0e-14	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Xylem serine proteinase 1, putative	-	-	2.547e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.078e-07	-
Sma3	Cucumisin.	EC:3.4.21.25	-	1.2e-08	-

Source	Gene names
Sma3	AIR3; At2g04160; GSVIVT00011159001; GSVIVT00011830001; GSVIVT00011831001; GSVIVT00011833001; GSVIVT00012462001; GSVIVT00012463001; GSVIVT00012466001; GSVIVT00014361001; GSVIVT00029050001; GSVIVT00033477001; OJ1293_A01.21; OsI_09164; OsI_31779; OsJ_08604;

Source	GOs	Term	Type	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04160.1	AIR3 Subtilisin-like serine endopeptidase family protein chr2:1401450-1407694 REVERSE LENGTH=772	2.0e-17	66%
RefSeq	Arabidopsis thaliana	NP_565309.2	Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	3.0e-17	66%
RefSeq	Populus trichocarpa	XP_002306266.1	predicted protein [Populus trichocarpa]	8.0e-19	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQV9

Fln msg: Distance to subject end: 386 aas, your sequence is shorter than subject: 58 - 766

Fln protein: GKVVVCSAGNDGPTPGTVSNVAPWIITVGASSINRQFPSSAILGNNKTYIGESISEYQ

Protein Length: 59

Fln nts: AGGAAAGGTAGTTGTCTGTTCCGCTGGAAATGATGGTCCTACTCCGGGGACAGTTTCAAATGTGGCACCATGGATCATAACCGTGGGAGCAAGCAGCATTAATAGACAATTTCCTTCAAGTGCGATTCTTGGAAACAACAAGACATATATAGGAGAAAGCATATCCGAATACCAGTT

Fln Alignment:

HLKU4M004JPC7U___GKVVVCSAGNDGPTPGTVSNVAPWIITVGASSINRQFPSSAILGNNKTYIGESI
C0PQV9________________GVFVSCAAGNAGPIPSKIFNTAPWITTVGASTIDREFPAPVVLGNGKNYRGSSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain