SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152685

Length: 515 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152685
CGAGCTGCCCGATGGTCAGGTCATCACCATCGGTAGCGAGCGCTTCCGCTGCCCCGAGGTGTTGTTCAAGCCCTCTTTGATCGGTCTCGAGCAGGAAGGTATCCACTCCGCCACCTACAACTCCATCATGAAGTGCGATGTCGATATCCGCAAGGATCTGTACGGCAACATCGTGCTGTCCGGTGGTACCACCATGTTCCCCGGCATTGAGGTCCGCATGACCAAGGAGATCACTGCTCTGGCTCCTCCGTCTATGAAGATCAAGGTCGTTGCTCCTCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGTTCCATTCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCTGGTCCCTCTATCGTCCACCGCAAGTGCTTCTAAGCTATTTATCCTCACCCCACTTACTTTCGCGCCCGTTGATTACACAATATTACCTGCCTACTGCGGCTGAGGCAACCTGTAAATAAAGTCGCTGTGTATATATACG

Ace file of the UniGene sp_v3.0_unigene152685 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin/actin fusion protein 2 n=7 Tax=Eukaryota RepID=Q7XBP8_BIGNA	-	-	0.0	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Actin	-	-	6.87e-37	-

Source	Gene names
Sma3	AC100; AC101; AC2; AC58; AC71; AC75; AC97; ACT; ACT-1; ACT1; ACT10; ACT11; ACT12; ACT13; ACT14; ACT15; ACT2; ACT3; ACT4; ACT5; ACT6; ACT7; ACT8; ACT9; ACTIN; AT3G18780; Ac1; Ac2; Act; Act1; Act3; Act5; Act7; At1g49240; At3g12110; At3g12110/T21B14_108; At3

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cytoskeleton	GO:0005200	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Actin-like	IPR004000	-	-
Sma3	Actin, conserved site	IPR004001	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09810.1	ACT7 actin 7 chr5:3052809-3054220 FORWARD LENGTH=377	90%
RefSeq	Arabidopsis thaliana	NP_196543.1	actin 7 [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002298710.1	actin 1 [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMN7

Fln msg: your sequence is shorter than subject: 136 - 244

Fln protein: ELPDGQVITIGSERFRCPEVLFKPSLIGLEQEGIHSATYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIEVRMTKEITALAPPSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*

Protein Length: 137

Fln nts: CGAGCTGCCCGATGGTCAGGTCATCACCATCGGTAGCGAGCGCTTCCGCTGCCCCGAGGTGTTGTTCAAGCCCTCTTTGATCGGTCTCGAGCAGGAAGGTATCCACTCCGCCACCTACAACTCCATCATGAAGTGCGATGTCGATATCCGCAAGGATCTGTACGGCAACATCGTGCTGTCCGGTGGTACCACCATGTTCCCCGGCATTGAGGTCCGCATGACCAAGGAGATCACTGCTCTGGCTCCTCCGTCTATGAAGATCAAGGTCGTTGCTCCTCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGTTCCATTCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCTGGTCCCTCTATCGTCCACCGCAAGTGCTTCTAA___GCTATTTATCCTCACCCCACTTACTTTCGCGCCCGTTGATTACACAATATTACCTGCCTACTGCGGCTGAGGCAACCTGTAAATAAAGTCGCTGTGTATATATACG

Fln Alignment:

HLKU4M004J0LCC___ELPDGQVITIGSERFRCPEVLFKPSLIGLEQEGIHSATYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIEVRMTKEITALAPPSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
A9NMN7________________ELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain