SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152629

Length: 304 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152629
CAAAAGCGGCGAATGCAAAACTGAATTCGATCTTACATCCAAAAAGATTACTCCAATGGGTGGATTTCCTCACTATGGTATTGTAGATGAAGATTATTTGATGATTAGAGGATGCTGCCCTGGCCCTCGTAAGAGAGTTATTACATTGAGGAAGTCTCTCCTTGCCCAGACAAACCGTACCGCTCTAGAACAAATTCATCTCAAATTTGTCGATACTGCCTCAACTCTTGGTCATGGTAAGTTCCAGACCCCCGAGGAGAAGAGCAAATTTATGGGACCTCTCAAACACGAGGTGGAGAAGGAG

Ace file of the UniGene sp_v3.0_unigene152629 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L3e (Fragment) n=2 Tax=Neoptera RepID=Q4GXN8_9COLE	-	-	2.0e-32	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Ribosomal protein L3	-	-	1.239e-17	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; CHLREDRAFT_126189; Csf-3; EMB2207; GSVIVT00019342001; GSVIVT00031743001; GSVIVT00035280001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; Ot01g00490; PHATR_13361;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L3	IPR000597	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Ribosomal protein L11, bacterial-type	IPR006519	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G61580.1	RPL3B, ARP2 R-protein L3 B chr1:22720833-22722402 REVERSE LENGTH=390	4.0e-38	69%
RefSeq	Arabidopsis thaliana	NP_176352.1	60S ribosomal protein L3-2 [Arabidopsis thaliana]	5.0e-38	69%
RefSeq	Populus trichocarpa	XP_002333867.1	predicted protein, partial [Populus trichocarpa]	1.99965e-42	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 101 - 389

Fln protein: KSGECKTEFDLTSKKITPMGGFPHYGIVDEDYLMIRGCCPGPRKRVITLRKSLLAQTNRTALEQIHLKFVDTASTLGHGKFQTPEEKSKFMGPLKHEVEKE

Protein Length: 102

Fln nts: CAAAAGCGGCGAATGCAAAACTGAATTCGATCTTACATCCAAAAAGATTACTCCAATGGGTGGATTTCCTCACTATGGTATTGTAGATGAAGATTATTTGATGATTAGAGGATGCTGCCCTGGCCCTCGTAAGAGAGTTATTACATTGAGGAAGTCTCTCCTTGCCCAGACAAACCGTACCGCTCTAGAACAAATTCATCTCAAATTTGTCGATACTGCCTCAACTCTTGGTCATGGTAAGTTCCAGACCCCCGAGGAGAAGAGCAAATTTATGGGACCTCTCAAACACGAGGTGGAGAAGGAG

Fln Alignment:

HLKU4M004IUD7L___KSGECKTEFDLTSKKITPMGGFPHYGIVDEDYLMIRGCCPGPRKRVITLRKSLLAQTNRTALEQIHLKFVDTASTLGHGKFQTPEEKSKFMGPLK
A9NZI7________________ESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain