SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152378

Length: 374 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152378
TGGTGCTCTGGCTATGATTGATGAAGGTGAAACTGACTGGAAGATTCTTGCCATTGATGTCAGAGATCCTTTGGCTGAGAAATTGAATGACATTGACGACATTGAGAGGGAAAAGCCTGGTTTCCTCCAGGCTACCATGGAGTGGTTCCGCGACTACAAGAGCCCGACTGTCAACAAGTTCGCCTTTGAAGGCAAGGCCAAGCCCAAGTCGTATGCTCTCAAGCTCGTTGAAGAGAACCACGAGTTCTGGAAGGACTTGATTTCGGGCAAGACTCCTGCCAAGGGTGCCAAGTACGAAATCAATGTAACCAGGAAGAACTAAATGCTTTATCTTCGACCTTTTCCCTTCAAGAAATAAAGCGTACTTGAAGACT

Ace file of the UniGene sp_v3.0_unigene152378 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	inorganic diphosphatase [Coprinopsis cinerea okayama7#130] gb\|EAU92823.1\| inorganic diphosphatase [Coprinopsis cinerea okayama7#130]	-	-	1.0e-29	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	GSVIVT00013522001; GSVIVT00015038001; OJ1767_D02.15-1; OJ1767_D02.15-2; Os02g0768600; OsI_09082; OsJ_08520; PHATRDRAFT_14529; POPTRDRAFT_557583; POPTRDRAFT_707493; RCOM_0816840;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	inorganic diphosphatase activity	GO:0004427	Molecular Function	-
Sma3	phosphate-containing compound metabolic process	GO:0006796	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09650.1	AtPPa6, PPa6 pyrophosphorylase 6 chr5:2991331-2993117 REVERSE LENGTH=300	1.0e-24	48%
RefSeq	Arabidopsis thaliana	NP_196527.1	soluble inorganic pyrophosphatase 1 [Arabidopsis thaliana]	2.0e-24	48%
RefSeq	Populus trichocarpa	XP_002313207.1	predicted protein [Populus trichocarpa]	6.0e-27	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLE1

Fln msg: your sequence is shorter than subject: 107 - 303

Fln protein: GALAMIDEGETDWKILAIDVRDPLAEKLNDIDDIEREKPGFLQATMEWFRDYKSPTVNKFAFEGKAKPKSYALKLVEENHEFWKDLISGKTPAKGAKYEINVTRKN*

Protein Length: 108

Fln nts: TGGTGCTCTGGCTATGATTGATGAAGGTGAAACTGACTGGAAGATTCTTGCCATTGATGTCAGAGATCCTTTGGCTGAGAAATTGAATGACATTGACGACATTGAGAGGGAAAAGCCTGGTTTCCTCCAGGCTACCATGGAGTGGTTCCGCGACTACAAGAGCCCGACTGTCAACAAGTTCGCCTTTGAAGGCAAGGCCAAGCCCAAGTCGTATGCTCTCAAGCTCGTTGAAGAGAACCACGAGTTCTGGAAGGACTTGATTTCGGGCAAGACTCCTGCCAAGGGTGCCAAGTACGAAATCAATGTAACCAGGAAGAACTAA___ATGCTTTATCTTCGACCTTTTCCCTTCAAGAAATAAAGCGTACTTGAAGACT

Fln Alignment:

HLKU4M004JAW4K___ALAMIDEGETDWKILAIDVRDPLAEKLNDIDDIEREKPGFLQATMEWFRDYKSP---TVNKFAFEGKAKPKSYALKLVEENHEFWKDLISGKTPA
A9NLE1________________ALAMIDEGELDWKIVAISVDDPRAPLVNDVNDVEKHFPGTLTAIRNWFRDYKIPDGKPANKFGLGDKPANKEYALKVIAETNESWAKLVKRSIPA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain