SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152201

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152201
GGGGCCACATTGGGTGCGCAATCACTGGGATGACCCCTGATGGTCGTGCCTATGTGCAGAGAGCCCGGTACGAAGCCGCAGATTTCAAGCACAAATATGGTTATGAGATCCCTGTAGACTTTCTCACTCGAACAATGGCCGACATTGCTCAGGTCTCTACTCAGGTGGCCTACATGAGGCCATTTGGAGTTTGTCTTACCTTTGTTGGTATTGACGAAGTGAAGGGACCACAACTGTACCAGTCTGATCCTGCTGGGTATTTTATTGGGTACAAGGCTACTGGTGCTGGTGCTAAGGCCGAAGAAGCCAACAACTGGTTAGAA

Ace file of the UniGene sp_v3.0_unigene152201 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type-6 n=37 Tax=Euteleostomi RepID=PSA6_HUMAN	-	-	2.0e-27	62%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Proteasome subunit alpha type	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	0.0	-

Source	Gene names
Sma3	At2g05840; At5g35590; CHLREDRAFT_128384; GSVIVT00034058001; K2K18.4; LOC_Os03g08280; MICPUCDRAFT_49613; MICPUN_107861; OSJNBa0050H14.19; OSJNBb0076N15.5; OSTLU_41449; Os03g0180400; Os07g0614100; OsI_10259; OsI_26853; OsJ_25116; OsPAA2; Ot06g00420; P0616D0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G05840.1	PAA2 20S proteasome subunit PAA2 chr2:2234226-2236053 FORWARD LENGTH=246	3.0e-28	55%
RefSeq	Arabidopsis thaliana	NP_001031340.1	proteasome subunit alpha type-6-B [Arabidopsis thaliana]	3.0e-28	55%
RefSeq	Populus trichocarpa	XP_002308263.1	predicted protein [Populus trichocarpa]	8.0e-29	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP38

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 107 - 246

Fln protein: GHIGCAITGMTPDGRAYVQRARYEAADFKHKYGYEIPVDFLTRTMADIAQVSTQVAYMRPFGVCLTFVGIDEVKGPQLYQSDPAGYFIGYKATGAGAKAEEANNWLE

Protein Length: 108

Fln nts: GGGGCCACATTGGGTGCGCAATCACTGGGATGACCCCTGATGGTCGTGCCTATGTGCAGAGAGCCCGGTACGAAGCCGCAGATTTCAAGCACAAATATGGTTATGAGATCCCTGTAGACTTTCTCACTCGAACAATGGCCGACATTGCTCAGGTCTCTACTCAGGTGGCCTACATGAGGCCATTTGGAGTTTGTCTTACCTTTGTTGGTATTGACGAAGTGAAGGGACCACAACTGTACCAGTCTGATCCTGCTGGGTATTTTATTGGGTACAAGGCTACTGGTGCTGGTGCTAAGGCCGAAGAAGCCAACAACTGGTTAGAA

Fln Alignment:

HLKU4M004IP6LX___IGCAITGMTPDGRAYVQRARYEAADFKHKYGYEIPVDFLTRTMADIAQVSTQVAYMRPFGVCLTFVGIDEVKGPQLYQSDPAGYFIGY
A9NP38________________IGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain