SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151888

Length: 341 nt

UniGene Fasta

>sp_v3.0_unigene151888
TCCGACAAGCACCCAATCAAGCAAGACATCAAGAACGGAAAACTCCGTTATGTTGCTGATGTCAACGGACACAAGGGATACCCATACAACTACGGTGCCTTCCCACAAACCTGGGAGGACCCATCCGTTGTCAACGAAGACACCGGAGCTAAGGGAGACAAGGACCCACTCGATGTTGTCGAAATTAGCAACCGTGTTGGTGTCACCGGAGAGATTAGACAAGTCAAGGTCATTGGTGTTCTTGGTTTGATTGATGAAGGAGAAACCGACTGGAAGATCATCGCCATTGATGTTGCCGATCCAGAAGCCGACAAGTTCAACGACATTGAAGATTTGGAGAA

Ace file of the UniGene sp_v3.0_unigene151888

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	inorganic pyrophosphatase [Torpedo marmorata]	-	-	3.0e-38	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Soluble inorganic pyrophosphatase 1, chloroplastic	-	-	7.149e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inorganic diphosphatase.	EC:3.6.1.1	-	8.784e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		8.784e-08	%

Source	Gene names
Sma3	At5g09650; CHLREDRAFT_133620; F17I14_160; GSVIVT00013522001; GSVIVT00015038001; IPY1; MICPUN_104824; OJ1767_D02.15-1; OJ1767_D02.15-2; OSTLU_40612; Os02g0768600; OsI_09082; OsJ_08520; Ot16g00230; PHATRDRAFT_14529; PHATRDRAFT_32923; PHYPADRAFT_134604; PHYP

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	inorganic diphosphatase activity	GO:0004427	Molecular Function	-
Sma3	phosphate-containing compound metabolic process	GO:0006796	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	0.0	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09650.1	AtPPa6, PPa6 pyrophosphorylase 6 chr5:2991331-2993117 REVERSE LENGTH=300	6.0e-31	51%
RefSeq	Arabidopsis thaliana	NP_196527.1	soluble inorganic pyrophosphatase 1 [Arabidopsis thaliana]	8.0e-31	51%
RefSeq	Populus trichocarpa	XP_002298803.1	predicted protein [Populus trichocarpa]	1.0e-33	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLE1

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 113 - 303

Fln protein: SDKHPIKQDIKNGKLRYVADVNGHKGYPYNYGAFPQTWEDPSVVNEDTGAKGDKDPLDVVEISNRVGVTGEIRQVKVIGVLGLIDEGETDWKIIAIDVADPEADKFNDIEDLE

Protein Length: 114

Fln nts: TCCGACAAGCACCCAATCAAGCAAGACATCAAGAACGGAAAACTCCGTTATGTTGCTGATGTCAACGGACACAAGGGATACCCATACAACTACGGTGCCTTCCCACAAACCTGGGAGGACCCATCCGTTGTCAACGAAGACACCGGAGCTAAGGGAGACAAGGACCCACTCGATGTTGTCGAAATTAGCAACCGTGTTGGTGTCACCGGAGAGATTAGACAAGTCAAGGTCATTGGTGTTCTTGGTTTGATTGATGAAGGAGAAACCGACTGGAAGATCATCGCCATTGATGTTGCCGATCCAGAAGCCGACAAGTTCAACGACATTGAAGATTTGGAGAA

Fln Alignment:

HLKU4M004JEENJ___PIKQDIKNGKLRYVADVNGHKGYPYN----YGAFPQTWEDPSVVNEDT-GAKGDKDPLDVVEISNRVGVTGEIRQVKVIGVLGLIDEGETDWKIIAIDVADPEADKFNDIEDLE
A9NLE1________________PIKQDTKKGKLRY---------YPYNINWNYGLLPQTWEDPSLANAEVEGAFGDNDPVDVVEIGERQAKMGEVLKVKPLAALAMIDEGELDWKIVAISVDDPRAPLVNDVNDVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain