SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151812

Length: 543 nt

UniGene Fasta

>sp_v3.0_unigene151812
TTTCCTTCCCACGCACCTGAAGTTCCGGGAGTCTCATGTCTGACCTGTTCGATGTCGGCGCCGAAGGCGTTGAGCGTCTGCCGTTAAAGAGCTACACCGAGAAGGCCTACCTCGACTATTCGATGTACGTCATCCTCGACCGCGCCCTGCCCCATGTGGCCGATGGCCTCAAGCCGGTGCAGCGCCGCATCGTTTATGCGATGAGCGAGCTGAGCCTGCGCTCCACCGCCAAGCACAAGAAATCGGCCCGCACCGTCGGTGACGTCATCGGTAAATTCCATCCGCATGGCGATTCGGCCGTGTACGAAGCCATGGTGTTGATGGCGCAGCCGTTCTCTTACCGCTATCCGCTGGTCGATGGCCAGGGCAACTGGGGCTCGCCGGATGATCCGAAATCGTTTGCGGCGATGCGTTACACCGAATCGCGCATGTCAAAATTCGCGGACGCGTTGTTGAGCGAAATCGAACAGGGTACGGTGGACTGGGTGCCGAACTTCGATGGCACCTTCGAGGAGCCTTCGCTGCTGCCAGCGCGCGTGCCGC

Ace file of the UniGene sp_v3.0_unigene151812

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Topoisomerase IV subunit A n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHZ0_9GAMM	-	-	0.0	81%
FL-Next	sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana.	-	-	0.0	58%
Sma3	Probable DNA gyrase subunit A, chloroplastic/mitochondrial	-	-	7.399e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	8.576e-15	-

Source	Gene names
Sma3	At3g10690; CHLREDRAFT_115934; DNA_TopoIV; F13M14.2; GSVIVT00033901001; GYRA; LOC_Os03g59750; MICPUCDRAFT_52348; MICPUN_88167; OSJNBa0024F18.37; OSJNBb0033J23.17; OSTLU_28121; Os03g0812000; OsI_14033; OsJ_13077; Ot17g01710; PHATR_33633; PHYPADRAFT_135715;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleoid	GO:0009295	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA gyrase, subunit A	IPR005743	-	-
Sma3	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel	IPR006691	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10690.1	GYRA DNA GYRASE A chr3:3339612-3346243 REVERSE LENGTH=950	57%
RefSeq	Arabidopsis thaliana	NP_187680.2	DNA gyrase subunit A [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002315402.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5YLB5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 688 aas, your sequence is shorter than subject: 180 - 935

Fln protein: SFPRT*SSGSLMSDLFDVGAEGVERLPLKSYTEKAYLDYSMYVILDRALPHVADGLKPVQRRIVYAMSELSLRSTAKHKKSARTVGDVIGKFHPHGDSAVYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRMSKFADALLSEIEQGTVDWVPNFDGTFEEPSLLPARVP

Protein Length: 181

Fln nts: TTTCCTTCCCACGCACCTGAAGTTCCGGGAGTCTCATGTCTGACCTGTTCGATGTCGGCGCCGAAGGCGTTGAGCGTCTGCCGTTAAAGAGCTACACCGAGAAGGCCTACCTCGACTATTCGATGTACGTCATCCTCGACCGCGCCCTGCCCCATGTGGCCGATGGCCTCAAGCCGGTGCAGCGCCGCATCGTTTATGCGATGAGCGAGCTGAGCCTGCGCTCCACCGCCAAGCACAAGAAATCGGCCCGCACCGTCGGTGACGTCATCGGTAAATTCCATCCGCATGGCGATTCGGCCGTGTACGAAGCCATGGTGTTGATGGCGCAGCCGTTCTCTTACCGCTATCCGCTGGTCGATGGCCAGGGCAACTGGGGCTCGCCGGATGATCCGAAATCGTTTGCGGCGATGCGTTACACCGAATCGCGCATGTCAAAATTCGCGGACGCGTTGTTGAGCGAAATCGAACAGGGTACGGTGGACTGGGTGCCGAACTTCGATGGCACCTTCGAGGAGCCTTCGCTGCTGCCAGCGCGCGTGCCGC

Fln Alignment:

HLKU4M004H4BEA___GAEGVERLPLKSYTEKAYLDYSMYVILDRALPHVADGLKPVQRRIVYAMSELSLRSTAKHKKSARTVGDVIGKFHPHGDSAVYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPKSFAAMRYTESRMSKFADA-LLSEIEQGTVDWVPNFDGTFEEPSLLPARVP
Q5YLB5________________GGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPP--AAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain