SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150914

Length: 469 nt

UniGene Fasta

>sp_v3.0_unigene150914
ACTTACTGGCTGTCAGGCTTTTACTTTACTCAGGCCTTTTTGACGGGTGTGCAACAAAACTATGCTCGCCGTCGCAAGATTCCAATTGATTTGCTGGGCTTTGACTTTGACATTCTGGACTACCAGGAGTACACGCAACCGCCGTCCGAGGGAGCGTACGTGTATGGCCTCTTCATTGAGGGTGCTCGATGGGACTTGGAGACCAAGCTGTTGGGAGAGCAGCGCCCCAAGATTCTGTCTGAGAAGATGCCTGTCATCTGGCTCAAGCCTGCCCGCAAGGATGAGATCAAGCCGCCACCTCACTACATTGCGCCGCTGTACAAGACCAGCGAGCGCCGCGGTGTGCTTGCCACCACCGGTCACTCGTCCAACTTTGTCATGGGCATCTGCCTGCCGACCGACAAGCCAGCGGCGCAATGGATCACGCGAAGTGTTGCGCTTCTCACGCAGCTCGACGACTAAGTGTGTG

Ace file of the UniGene sp_v3.0_unigene150914

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dynein heavy chain 7 n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UGU8_9EUKA	-	-	0.0	63%
FL-Next	sp=Dynein alpha chain, flagellar outer arm; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	35%
Sma3	Dynein heavy chain	-	-	2.115e-22	-

Source	Gene names
Sma3	CHLREDRAFT_117608; CHLREDRAFT_126477; CHLREDRAFT_126616; CHLREDRAFT_130324; CHLREDRAFT_133402; CHLREDRAFT_134599; CHLREDRAFT_135994; DHC1; DHC1.2; DHC11; DHC2; DHC3; DHC4; DHC5; DHC6; DHC8; DHC9; MICPUCDRAFT_35233; MICPUCDRAFT_45818; MICPUCDRAFT_45980; MI

Source	GOs	Term	Type	Identity
Sma3	dynein complex	GO:0030286	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Dynein heavy chain	IPR004273	-	-
Sma3	ATPase, dynein-related, AAA domain	IPR011704	-	-
Sma3	Dynein heavy chain, domain-2	IPR013602	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q39610

Fln msg: your sequence is shorter than subject: 154 - 4499

Fln protein: TYWLSGFYFTQAFLTGVQQNYARRRKIPIDLLGFDFDILDYQEYTQPPSEGAYVYGLFIEGARWDLETKLLGEQRPKILSEKMPVIWLKPARKDEIKPPPHYIAPLYKTSERRGVLATTGHSSNFVMGICLPTDKPAAQWITRSVALLTQLDD*

Protein Length: 155

Fln nts: ACTTACTGGCTGTCAGGCTTTTACTTTACTCAGGCCTTTTTGACGGGTGTGCAACAAAACTATGCTCGCCGTCGCAAGATTCCAATTGATTTGCTGGGCTTTGACTTTGACATTCTGGACTACCAGGAGTACACGCAACCGCCGTCCGAGGGAGCGTACGTGTATGGCCTCTTCATTGAGGGTGCTCGATGGGACTTGGAGACCAAGCTGTTGGGAGAGCAGCGCCCCAAGATTCTGTCTGAGAAGATGCCTGTCATCTGGCTCAAGCCTGCCCGCAAGGATGAGATCAAGCCGCCACCTCACTACATTGCGCCGCTGTACAAGACCAGCGAGCGCCGCGGTGTGCTTGCCACCACCGGTCACTCGTCCAACTTTGTCATGGGCATCTGCCTGCCGACCGACAAGCCAGCGGCGCAATGGATCACGCGAAGTGTTGCGCTTCTCACGCAGCTCGACGACTAA___GTGTGTG

Fln Alignment:

HLKU4M004I28SA___WLSGFYFTQAFLTGVQQNYARRRKIPXXXXXXXXXXXXY---QEYTQPPSEGAYVYGLFIEGARWDLETKLLGEQRPKILSEKMPVIWLKPARKDEIKPPPHYIAPLYKTSERRGVLATTGHSSNFVMGICLPTDKPAAQWITRSVALLTQLD
Q39610________________WLPGLFNPKAFLTAVMQTFARANKLPLDVMKFMTEVTRMTSPEQVTEAAPLGVYVHGLVLEGARWDREDGCLRDSKPNELHPAMPVLQVKPVTADQFNLEGYYECPVYTNMQRANVY------SPVVSTFTLRTQDMPAKWVLASVALLLQDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain