SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150195

Length: 353 nt

UniGene Fasta

>sp_v3.0_unigene150195
ATCTGAGACTGCAGATGCAGAAGGTGATGCAGGACAATGCCGCTGTGTATCGTGCGGATGAGACCCTCAAGGAGGGAAAGAAGTTGATTGATGAGAAGGTGCAGTTGTTCAGTGACATCAAGGTCAGTGATAGATCCATGATATGGAACACTGACCTGGTGGAGACGCTGGAGCTGCGCAACCTGTTGGCCAATGCTGCTGTGACTATGCACGCTGCAGAGGCCAGAAAGGAGTCGAGAGGTGCTCACGCTAGAGAGGATTTCAAGGAGCGTGATGATGTGAACTGGATGAAGCACACTCTGGGCTACTTTGACACTGAGACAGGCAAGACCACCATCACCTACAGAGCGAAC

Ace file of the UniGene sp_v3.0_unigene150195

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Succinate dehydrogenase subunit A, mitochondrial n=1 Tax=Volvox carteri f. nagariensis RepID=D8TTD9_VOLCA	-	-	1.0e-39	68%
FL-Next	sp=Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Sma3	FP	-	-	1.808e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Succinate dehydrogenase (ubiquinone).	EC:1.3.5.1	-	3.179e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	3.179e-19	%
Sma3	Oxidative phosphorylation	00190	3.179e-19	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.179e-19	%
Sma3	Biosynthesis of terpenoids and steroids	01062	3.179e-19	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.179e-19	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	3.179e-19	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	3.179e-19	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	3.179e-19	%
Sma3	Biosynthesis of plant hormones	01070	3.179e-19	%
Sma3	Metabolic pathways	01100	3.179e-19	%
Sma3	Biosynthesis of secondary metabolites	01110	3.179e-19	%

Source	Gene names
Sma3	At2g18450; At5g66760; CHLREDRAFT_195972; GSVIVT00008859001; GSVIVT00024946001; LOC_Os07g04240; MICPUCDRAFT_30055; MICPUN_106467; MSN2.16; OSTLU_29304; Os07g0134800; OsI_24801; OsJ_23002; Ot14g00120; P0507H12.27; PHATR_41812; PHYPADRAFT_181904; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	succinate dehydrogenase activity	GO:0000104	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	succinate dehydrogenase (ubiquinone) activity	GO:0008177	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-CH group of donors	GO:0016627	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	mitochondrial electron transport, succinate to ubiquinone	GO:0006121	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate reductase/succinate dehydrogenase, FAD-binding site	IPR003952	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3		IPR004112	-	-
Sma3	Succinate dehydrogenase, flavoprotein subunit	IPR011281	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	IPR014006	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18450.1	SDH1-2 succinate dehydrogenase 1-2 chr2:7997510-8000801 REVERSE LENGTH=632	66%
RefSeq	Arabidopsis thaliana	NP_179435.1	succinate dehydrogenase [ubiquinone] flavoprotein subunit 2 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002327807.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZPX5

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 117 - 632

Fln protein: LRLQMQKVMQDNAAVYRADETLKEGKKLIDEKVQLFSDIKVSDRSMIWNTDLVETLELRNLLANAAVTMHAAEARKESRGAHAREDFKERDDVNWMKHTLGYFDTETGKTTITYRAN

Protein Length: 118

Fln nts: ATCTGAGACTGCAGATGCAGAAGGTGATGCAGGACAATGCCGCTGTGTATCGTGCGGATGAGACCCTCAAGGAGGGAAAGAAGTTGATTGATGAGAAGGTGCAGTTGTTCAGTGACATCAAGGTCAGTGATAGATCCATGATATGGAACACTGACCTGGTGGAGACGCTGGAGCTGCGCAACCTGTTGGCCAATGCTGCTGTGACTATGCACGCTGCAGAGGCCAGAAAGGAGTCGAGAGGTGCTCACGCTAGAGAGGATTTCAAGGAGCGTGATGATGTGAACTGGATGAAGCACACTCTGGGCTACTTTGACACTGAGACAGGCAAGACCACCATCACCTACAGAGCGAAC

Fln Alignment:

HLKU4M004JDM5Y___LRLQMQKVMQDNAAVYRADETLKEGKKLIDEKVQLFSDIKVSDRSMIWNTDLVETLELRNLLANAAVTMHAAEARKESRGAHAREDFKERDDVNWMKHTLGYFDTETGKTTITYR
Q9ZPX5________________IRLNMQRVMQNNAAVFRTQETLEEGCDLIDKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDFTKRDDANWMKHTLGYW--EEGNVKLEYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain