SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150180

Length: 475 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150180
GCAGGTACTCGGAGATAACCTTGGCGCCACCATCAGTGGCTTCAAGGATGTCGCCCACACCGAGGCTGCGCTCGAGACTGCTGTGGGCTCGGTCGGTCCCGTGTCTGTGGCCATCGACGCGTCGCACCAAAGCTTCCAGTTCTACACCAAGGGCGTCTACTATGAGCCAAGCTGCAGCAGCACGCAGCTCGATCACGGTGTGTTGACCGTCGGCTACGGCGTGGAGGGTACTCAGGATTACTGGATCGTAAAGAACTCTTGGGGCACCACCTGGGGCATGTCCGGCTACATCCTCATGTCCCGCAACCGCAACAACAACTGCGGCATTGCCACTCAGCCATCGTACCCGATCGTGTAAATGTAAATACGCAACTTAGTACTACTACCGACTCCTGGAGGTTCGCAGTTCAAAGTACAAACGCGCTTGATCACAAGCGTGTCTGCGCAGTTGATAAAGATGCCTCAGTCAGTTCCC

Ace file of the UniGene sp_v3.0_unigene150180 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cathepsin L n=1 Tax=Suberites domuncula RepID=Q6A1I0_SUBDO	-	-	1.99965e-42	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Cysteine proteinase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.367e-08	-
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	2.274e-25	-

Source	Gene names
Sma3	AT4g23520; AsNODf32; At1g06260; At1g09850; At1g47128; At3g19390; At3g19400; At3g19400/MLD14.12; At3g45310; At4g11320; At4g36880; At5g43060; At5g43060/MMG4.7; B1417F08.21; BoCP3; BrCP3; C7A10.480; CP1; CP10; CP2; CP3; CP5; CPRF; CPRS1; CPRZ; CYS2; CysEP; C

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	MD-2-related lipid-recognition	IPR003172	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47128.1	RD21, RD21A Granulin repeat cysteine protease family protein chr1:17283139-17285609 REVERSE LENGTH=462	9.0e-30	48%
RefSeq	Arabidopsis thaliana	NP_564497.1	cysteine proteinase RD21a [Arabidopsis thaliana]	1.0e-29	48%
RefSeq	Populus trichocarpa	XP_002338508.1	predicted protein [Populus trichocarpa]	7.0e-29	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUC2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 74 aas, your sequence is shorter than subject: 119 - 463

Fln protein: QVLGDNLGATISGFKDVAHTEAALETAVGSVGPVSVAIDASHQSFQFYTKGVYYEPSCSSTQLDHGVLTVGYGVEGTQDYWIVKNSWGTTWGMSGYILMSRNRNNNCGIATQPSYPIV*

Protein Length: 120

Fln nts: GCAGGTACTCGGAGATAACCTTGGCGCCACCATCAGTGGCTTCAAGGATGTCGCCCACACCGAGGCTGCGCTCGAGACTGCTGTGGGCTCGGTCGGTCCCGTGTCTGTGGCCATCGACGCGTCGCACCAAAGCTTCCAGTTCTACACCAAGGGCGTCTACTATGAGCCAAGCTGCAGCAGCACGCAGCTCGATCACGGTGTGTTGACCGTCGGCTACGGCGTGGAGGGTACTCAGGATTACTGGATCGTAAAGAACTCTTGGGGCACCACCTGGGGCATGTCCGGCTACATCCTCATGTCCCGCAACCGCAACAACAACTGCGGCATTGCCACTCAGCCATCGTACCCGATCGTGTAAATGTAAATACGCAACTTAGTACTACTACCGACTCCTGGAGGTTCGCAGTTCAAAGTACAAACGCGCTTGATCACAAGCGTGTCTGCGCAGTTGATAAAGATGCCTCAGTCAGTTCCC

Fln Alignment:

HLKU4M004JPO6X___TISGFKDVAHTEAALETAVGSVGPVSVAIDASHQSFQFYTKGVYYEPSCSSTQLDHGVLTVGYGVEGTQDYWIVKNSWGTTWGMSGYILMSRN----RNNNCGIATQPSYPI
A9NUC2________________TIDDYEDVPENDEKSLKKAAANQPISVAIEASGRAFQFYESGVF--TSTCGTQLDHGVTLVGYGSESGTDYWIVKNSWGKSWGEKGFIRLQRNIEGVSTGMCGIAMEASYPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain