SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150052

Length: 208 nt

UniGene Fasta

>sp_v3.0_unigene150052
TATTTCAAATCATCCAAACTTCAAAGAAGACGATTTGGTAACCGGTATTACTGGATGGGAAGAATACAGCATAATACCTGGGGCCAATAACTTGCAGAAGATCAAAGATACAGATCTACCTATCTCATATTATTTGGGAGTTTTAGCTTCTGGAGCAGTTGGACAGCTTGTTGGACAGTTTGCAAAGTTGCATGGGTGTTATGTTGTT

Ace file of the UniGene sp_v3.0_unigene150052

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-alkenal reductase n=1 Tax=Artemisia annua RepID=C0LNV1_ARTAN	-	-	3.0e-16	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Gene names
Sma3	Dbr1; GSVIVT00034730001; VITISV_035662; VITISV_043825;

Source	GOs	Term	Type	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16990.1	Zinc-binding dehydrogenase family protein chr5:5581831-5583849 REVERSE LENGTH=343	9.0e-20	47%
RefSeq	Arabidopsis thaliana	NP_197201.1	2-alkenal reductase [Arabidopsis thaliana]	1.0e-19	47%
RefSeq	Populus trichocarpa	XP_002331653.1	predicted protein [Populus trichocarpa]	9.0e-22	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0J2

Fln msg: Distance to subject end: 161 aas, your sequence is shorter than subject: 69 - 344

Fln protein: ISNHPNFKEDDLVTGITGWEEYSIIPGANNLQKIKDTDLPISYYLGVLASGAVGQLVGQFAKLHGCYVV

Protein Length: 70

Fln nts: TATTTCAAATCATCCAAACTTCAAAGAAGACGATTTGGTAACCGGTATTACTGGATGGGAAGAATACAGCATAATACCTGGGGCCAATAACTTGCAGAAGATCAAAGATACAGATCTACCTATCTCATATTATTTGGGAGTTTTAGCTTCTGGAGCAGTTGGACAGCTTGTTGGACAGTTTGCAAAGTTGCATGGGTGTTATGTTGTT

Fln Alignment:

HLKU4M002DL6F6___ISNHPNFKEDDLVTGITGWEEYSIIPGANNLQKIKDTDLPISYYLGVL---------------------------ASGAVGQLVGQFAKLHGCYVV
A9P0J2________________ISNHPDFKEDDLVMGITGWEEYSIIPGGNQLQKIRYTDIPLSYYLGILGMPGLTAYVGFYDLSSPKAGEKVFISAASGAVGQLVGQFAKMHGCYVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain