SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150001

Length: 302 nt

UniGene Fasta

>sp_v3.0_unigene150001
AGGTATCTATCCATCTCCTTAGCGCCTATAGAAGACCAGGGACTAATTCCATCTTTCTCCATTTCTATTTCTCTTCCCAATCAAAACCATGGGGTCTAACGGACAGCTTAATGCAGGCACTGGCTGTGTTGGTGATCTGACCAATGTTGGAGATCGACGATTGGACGGCAAGGTTGCAATAGTAACGGGCGGGGCAGCGGGCATAGGAGAAGCTATTGTTCAGTTGTTCATTAAACATGGAGCCAAAGTCATAATCGCCGACGTTGCGGAGAAAGCTGGCAGAAAGCTTGAGCAATCCCTTT

Ace file of the UniGene sp_v3.0_unigene150001

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adh_short domain containing protein	-	-	1.0e-05	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Short chain alcohol dehydrogenase, putative	-	-	4.313e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase.	EC:1.1.1.53	-	7.41e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Steroid hormone biosynthesis	00140		7.41e-07	%
Sma3	Metabolic pathways	01100		7.41e-07	%

Source	Gene names
Sma3	GSVIVT00005501001; GSVIVT00037431001; LOC_Os03g18740; LOC_Os03g59610; OSJNBa0028F23.5; OSJNBb0033J23.3; Os03g0299200; Os03g0810800; OsI_11179; OsI_14018; OsJ_10511; OsJ_13064; POPTRDRAFT_560966; POPTRDRAFT_577103; POPTRDRAFT_913693; RCOM_0156780; RCOM_022

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ34

Fln msg: Distance to subject end: 223 aas, your sequence is shorter than subject: 71 - 294

Fln protein: MGSNGQLNAGTGCVGDLTNVGDRRLDGKVAIVTGGAAGIGEAIVQLFIKHGAKVIIADVAEKAGRKLEQSL

Protein Length: 72

Fln nts: AGGTATCTATCCATCTCCTTAGCGCCTATAGAAGACCAGGGACTAATTCCATCTTTCTCCATTTCTATTTCTCTTCCCAATCAAAACC_-_ATGGGGTCTAACGGACAGCTTAATGCAGGCACTGGCTGTGTTGGTGATCTGACCAATGTTGGAGATCGACGATTGGACGGCAAGGTTGCAATAGTAACGGGCGGGGCAGCGGGCATAGGAGAAGCTATTGTTCAGTTGTTCATTAAACATGGAGCCAAAGTCATAATCGCCGACGTTGCGGAGAAAGCTGGCAGAAAGCTTGAGCAATCCCTTT

Fln Alignment:

HLKU4M002ED0SL___SNGQLNAGTGCVGDLT-NVGDRRLDGKXXXXXXXXXXXXXXXXQLFIKHGAKVIIADVAEKAGRKLEQSL
A9NQ34________________SNEEVNGDSACVGSLSFNGSDRRLEGKVAIITGGAMGIGEAIVRLFTKHGAKVIIADFADEAGKNLAEHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain