SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149676

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene149676
AATATTTGAACAATTGCGCTCCGACTAATTATTCGAAGGTTTTCAAGCAGCAATGCCCCCAGGCCTACAGCTATGCAAAGGACGACGCCACCAGCACCTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGTCCCAATATGTCCCCCACAATGTCGCCCCGATCGACGAATTTGACACCGTTACCGGGCAATTCGACACACACGCCCGGTAAAAAGACATCGAAAAAAACTAGCTATATTGTTGGGAAGCGTCGTCGGTTCAACAGCTCTATTTGTCACGCTGTGCCTGGTGTTCGGTCGATGTG

Ace file of the UniGene sp_v3.0_unigene149676

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Sequoia sempervirens RepID=E9NHE5_SEQSE	-	-	1.0e-18	87%
FL-Next	tr=Thaumatin-like protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens).	-	-	0.0	87%
Sma3	Thaumatin-like protein	-	-	9.85113e-42	-

Source	Gene names
Sma3	5A1A.16; AP24; Cry j 3.1; Cry j 3.2; Cry j 3.3; Cry j 3.4; Cry j 3.6; Cry j 3.7; Cry j 3.8; GSVIVT00001102001; GSVIVT00001109001; GSVIVT00001110001; GSVIVT00001114001; LOC_Os03g45960; LOC_Os03g46070; LOC_Os12g43490; NaTLP1a; NaTLP1b; NaTLP1c; OLP; OSJNBa0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase inhibitor activity	GO:0004867	Molecular Function	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002325077.1	predicted protein [Populus trichocarpa]	7.0e-18	72%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: E9NHE5

Fln msg: STOP codon was not found. Distance to subject end: 73 aas, your sequence is shorter than subject: 119 - 232

Fln protein: YLNNCAPTNYSKVFKQQCPQAYSYAKDDATSTFTCPGSTDYKVVFCGGNATSLQGQNITVVSPNMSPTMSPRSTNLTPLPGNSTHTPGKKTSKKTSYIVGKRRRFNSSICHAVPGVRSM

Protein Length: 120

Fln nts: AATATTTGAACAATTGCGCTCCGACTAATTATTCGAAGGTTTTCAAGCAGCAATGCCCCCAGGCCTACAGCTATGCAAAGGACGACGCCACCAGCACCTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGTCCCAATATGTCCCCCACAATGTCGCCCCGATCGACGAATTTGACACCGTTACCGGGCAATTCGACACACACGCCCGGTAAAAAGACATCGAAAAAAACTAGCTATATTGTTGGGAAGCGTCGTCGGTTCAACAGCTCTATTTGTCACGCTGTGCCTGGTGTTCGGTCGATGTG

Fln Alignment:

HLKU4M002C9PA7___YLNNCAPTNYSKVFKQQCPQAYSYAKDDATSTFTCPGSTDYKVVFCG
E9NHE5________________YLNNCSPTNYSKFFKGQCPQAYSYAKDDATSTFTCPSGTNYKVVFCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain