SustainPineDB

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Assembly info
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149610

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene149610
TGCACTTCAGTCATATGCCTTTGAGCACATTGCAGTCTCCACAAGCAAAACTGTGCGGGGTGATAGGGTTGTGAGGGTGGTATCTGAATTGGGTAGAGCAACAGGCTCTCAGAGAGTTGCAGGTGGGCAGGTTGCTGAGAGGCATGCTTCTGTTGACCTTGAGACACTGCAGTGGATTCACATTCAGAAGACTGCAGTGCTCTTCGAGTGCTCAGC

Ace file of the UniGene sp_v3.0_unigene149610

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isoprenyl diphosphate synthase n=2 Tax=Picea RepID=D2IT07_PICAB	-	-	1.0e-20	73%
FL-Next	tr=Isoprenyl diphosphate synthase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	73%
Sma3	Geranyl diphosphate synthase	-	-	8.362e-12	-

Source	Gene names
Sma3	GGPPS; GPPS1; GPPS2; GPPS3; IDS2; IDS5; ggpps; ggps;

Source	GOs	Term	Type	e value	Identity
Sma3	farnesyltranstransferase activity	GO:0004311	Molecular Function	0.0	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Polyprenyl synthetase	IPR000092	-	-
Sma3	Terpenoid synthase	IPR008949	-	-
Sma3	Polyprenyl synthetase-related	IPR017446	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G18620.1	Terpenoid synthases superfamily protein chr2:8078317-8079360 FORWARD LENGTH=347	1.0e-11	45%
RefSeq	Arabidopsis thaliana	NP_179452.1	geranylgeranyl diphosphate synthase 7 [Arabidopsis thaliana]	2.0e-11	45%
RefSeq	Populus trichocarpa	XP_002302977.1	predicted protein [Populus trichocarpa]	2.0e-12	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D2IT07

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 71 - 383

Fln protein: ALQSYAFEHIAVSTSKTVRGDRVVRVVSELGRATGSQRVAGGQVAERHASVDLETLQWIHIQKTAVLFECS

Protein Length: 72

Fln nts: TGCACTTCAGTCATATGCCTTTGAGCACATTGCAGTCTCCACAAGCAAAACTGTGCGGGGTGATAGGGTTGTGAGGGTGGTATCTGAATTGGGTAGAGCAACAGGCTCTCAGAGAGTTGCAGGTGGGCAGGTTGCTGAGAGGCATGCTTCTGTTGACCTTGAGACACTGCAGTGGATTCACATTCAGAAGACTGCAGTGCTCTTCGAGTGCTCAGC

Fln Alignment:

HIF1XHV02DGV6J___ALQSYAFEHIAVSTSKTVRGDRVVRVVSELGRATGSQRVAGGQVA----ERHASVDLETLQWIHIQKTAVLFECS
D2IT07________________ALLSFAFEHIAVSTSKTVESDRVLRVVSELGRAIGSEGVAGGQVADITSQGNPSVGLETLEWIHIHKTAVLLECS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain