SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149508

Length: 149 nt

UniGene Fasta

>sp_v3.0_unigene149508
ATGAAGAGCTCCTGGAATTTGCGTGGGGATTGGCTTCCAGCAACCAATCTTTCCTGTGGGTTGTGAGGCCAGATATAGTTCAGGGTGAATACTAGCCATATTACCGAAAGAGTTCATTGAGGAAACCAAGGGTAGAGGTCTGCTGGTGG

Ace file of the UniGene sp_v3.0_unigene149508

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300186.1	predicted protein [Populus trichocarpa]	6.0e-11	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUG6

Fln msg: Separated hits, possible frame ERROR between 89 and 95, Distance to subject end: 136 aas, your sequence is shorter than subject: 49 - 493

Fln protein: EELLEFAWGLASSNQSFLWVVRPDIVQGxxxAILPKEFIEETKGRGLLV

Protein Length: 50

Fln nts: ATGAAGAGCTCCTGGAATTTGCGTGGGGATTGGCTTCCAGCAACCAATCTTTCCTGTGGGTTGTGAGGCCAGATATAGTTCAGGGTGAxxxxxxAGCCATATTACCGAAAGAGTTCATTGAGGAAACCAAGGGTAGAGGTCTGCTGGTGG

Fln Alignment:

HIF1XHV02DUA3Q___EELLEFAWGLASSNQSFLWVVRPDIVQGExxAILPKEFIEETKGRGLLV
A9NUG6________________EELLEFAWGLASSNQSFLWVVRTDIVHGExxAILPKEFIEETKNRGMLV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain