SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149397

Length: 157 nt

UniGene Fasta

>sp_v3.0_unigene149397
CTGAAGAATTAGGAGCAACATGTTCTACCGCATTAGATGAATCTGTAACTCATGTTGTTGCTCTAGATTTAGGAACTGATAAAGCACGCTGGGCTGTGCAGCATAAACGTTATTTGGTTCACCCTCACTGGCTTGAAGCAGCAGGCTACTTGTGGCA

Ace file of the UniGene sp_v3.0_unigene149397

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA polymerase II C-terminal domain phosphatase-like 4 n=2 Tax=Arabidopsis RepID=CPL4_ARATH	-	-	4.0e-15	68%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%

Source	Gene names
Sma3	At5g58003; CPL4; GSVIVT00013355001; GSVIVT00035715001; OJ1057_G07.1; Os05g0390500; OsI_19828; OsI_19829; OsJ_18418; PHYPADRAFT_121133; PHYPADRAFT_198166; POPTRDRAFT_578761;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	FCP1-like phosphatase, phosphatase domain	IPR011947	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58003.1	CPL4 C-terminal domain phosphatase-like 4 chr5:23480066-23481924 FORWARD LENGTH=440	9.0e-21	68%
RefSeq	Arabidopsis thaliana	NP_001078764.1	RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana]	1.0e-20	68%
RefSeq	Populus trichocarpa	XP_002324547.1	predicted protein [Populus trichocarpa]	4.0e-19	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q00IB6

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 51 - 440

Fln protein: EELGATCSTALDESVTHVVALDLGTDKARWAVQHKRYLVHPHWLEAAGYLW

Protein Length: 52

Fln nts: CTGAAGAATTAGGAGCAACATGTTCTACCGCATTAGATGAATCTGTAACTCATGTTGTTGCTCTAGATTTAGGAACTGATAAAGCACGCTGGGCTGTGCAGCATAAACGTTATTTGGTTCACCCTCACTGGCTTGAAGCAGCAGGCTACTTGTGGCA

Fln Alignment:

HIF1XHV02D0RFL___EELGATCSTALDESVTHVVALDLGTDKARWAVQHKRYLVHPHWLEAAGYLW
Q00IB6________________EELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain