SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149358

Length: 196 nt

UniGene Fasta

>sp_v3.0_unigene149358
AGATAATGTCTCAAAATTTAGCAAGGGTGATGAAATATATGGTAATATCCAAAACTTTAACACAGGTAGGCTAAAACAATGTGGAACTTTAACACAATACACAGCAGTGGAAGAGAGTCTGATTGCTTTGAAGCCCGAAAACATGTCCTTTGAAGAAGCAGCCAGCTTTCCTCTAGCTCTTCAAACTGCCCAGGAA

Ace file of the UniGene sp_v3.0_unigene149358

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	quinone oxidoreductase-like protein [Arabidopsis thaliana]	-	-	1.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	GSVIVT00026262001; RCOM_1612540;

Source	GOs	Term	Type	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein chr1:8398245-8399656 REVERSE LENGTH=386	3.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_173786.1	quinone oxidoreductase-like protein [Arabidopsis thaliana]	4.0e-14	49%
RefSeq	Populus trichocarpa	XP_002323668.1	predicted protein [Populus trichocarpa]	1.0e-14	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NR38

Fln msg: Distance to subject end: 99 aas, your sequence is shorter than subject: 65 - 242

Fln protein: DNVSKFSKGDEIYGNIQNFNTGRLKQCGTLTQYTAVEESLIALKPENMSFEEAASFPLALQTAQE

Protein Length: 66

Fln nts: AGATAATGTCTCAAAATTTAGCAAGGGTGATGAAATATATGGTAATATCCAAAACTTTAACACAGGTAGGCTAAAACAATGTGGAACTTTAACACAATACACAGCAGTGGAAGAGAGTCTGATTGCTTTGAAGCCCGAAAACATGTCCTTTGAAGAAGCAGCCAGCTTTCCTCTAGCTCTTCAAACTGCCCAGGAA

Fln Alignment:

HIF1XHV02C1LTT___DNVSKFSKGDEIYGNIQNFNTGRLKQCGTLTQYTAVEESLIALKPENMSFEEAASFPLALQTAQE
A9NR38________________DNVSMFSKGDEVYGNIQSFNTVGPKQYGTLTQYTAVEESLIALKPENMSFEEAASFPLALQTAQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain