SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149149

Length: 250 nt

UniGene Fasta

>sp_v3.0_unigene149149
ATGTTGCTCTTGAAGATGTATACTTTGCTTACCCACTAAGGCCTGATGCCCAAATCTTGAATGGGTTCACTCTTAACTTGAACCGTGGAACAGTAACAGCTCTTGTGGGTTCAAGTGGTGCGGGAAAAAGTACAGTTGTGCAGCTCTTGGCACGCTTCTATGAGCCAGTACAAGGTCGAATAACAATAGCTGGAGAAGATGTGCGGATGTTTGACAAAACTGAATGGGCACGTACTGTTTCCATTGTGAA

Ace file of the UniGene sp_v3.0_unigene149149

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter B family member 28 n=4 Tax=Arabidopsis thaliana RepID=AB28B_ARATH	-	-	7.0e-31	78%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	48%
Sma3	MDR-like ABC transporter	-	-	1.431e-06	-

Source	Gene names
Sma3	At4g25450; CHLREDRAFT_138602; CHLREDRAFT_138672; GSVIVT00007416001; M7J2.180; MICPUN_87670; NAP8; Os07g0464600; OsI_25916; OsJ_24163; P0473C09.107; PGP1; PHYPADRAFT_193090; POPTRDRAFT_572531; POPTRDRAFT_575755; POPTRDRAFT_834831; RCOM_1354650; RCOM_149758

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25450.1	ATNAP8, NAP8 non-intrinsic ABC protein 8 chr4:13009845-13013912 REVERSE LENGTH=714	2.0e-38	78%
RefSeq	Arabidopsis thaliana	NP_001078446.1	ABC transporter B family member 28 [Arabidopsis thaliana]	7.0e-39	78%
RefSeq	Populus trichocarpa	XP_002321879.1	predicted protein [Populus trichocarpa]	1.0e-35	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 847 aas, your sequence is shorter than subject: 82 - 1316

Fln protein: VALEDVYFAYPLRPDAQILNGFTLNLNRGTVTALVGSSGAGKSTVVQLLARFYEPVQGRITIAGEDVRMFDKTEWARTVSIV

Protein Length: 83

Fln nts: ATGTTGCTCTTGAAGATGTATACTTTGCTTACCCACTAAGGCCTGATGCCCAAATCTTGAATGGGTTCACTCTTAACTTGAACCGTGGAACAGTAACAGCTCTTGTGGGTTCAAGTGGTGCGGGAAAAAGTACAGTTGTGCAGCTCTTGGCACGCTTCTATGAGCCAGTACAAGGTCGAATAACAATAGCTGGAGAAGATGTGCGGATGTTTGACAAAACTGAATGGGCACGTACTGTTTCCATTGTGAA

Fln Alignment:

HIF1XHV02DDHBD___VALEDVYFAYPLRPDAQILNGFTLNLNRGTVTALVGSSGAGKSTVVQLLARFYEPVQGRITIAGEDVRMFDKTEWAR
E6Y0T0________________IELKDVRFTYPARPDVQVFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKF-QLKWIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain