SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149024

Length: 155 nt

UniGene Fasta

>sp_v3.0_unigene149024
GGAGTTCAACACTGTTTGGCATTGCTCTGCTAGCTTCTGGTCAAAGTTCGACAATAACAGGGACCTATGCTGGACAGTATGTGATGCAGGGATTTTTACATTTACGGTTTGCACCATGGATTAGGAATATGCTTACAAGATGTGTTGCAATAATC

Ace file of the UniGene sp_v3.0_unigene149024

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nramp family protein n=2 Tax=Selaginella moellendorffii RepID=D8R6F1_SELML	-	-	7.0e-18	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Nramp transporter	-	-	6.735e-20	-

Source	Gene names
Sma3	At1g15960; At1g80830; B1153E06.4; CsNramp1; DMT1; F23A5.18; GSVIVT00011628001; GSVIVT00015427001; GSVIVT00015429001; GSVIVT00019614001; GSVIVT00033760001; LOC_Os03g11010; MICPUCDRAFT_32717; MICPUN_67467; NRAMP1; NRAMP5.1; NRAMP6; Nramp1; OJ1057_E05.110; O

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80830.1	NRAMP1, PMIT1, ATNRAMP1 natural resistance-associated macrophage protein 1 chr1:30373066-30375644 REVERSE LENGTH=532	2.0e-22	84%
RefSeq	Arabidopsis thaliana	NP_178198.1	metal transporter Nramp1 [Arabidopsis thaliana]	2.0e-22	84%
RefSeq	Populus trichocarpa	XP_002332060.1	nramp transporter [Populus trichocarpa]	1.0e-20	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLH7

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 51 - 518

Fln protein: SSTLFGIALLASGQSSTITGTYAGQYVMQGFLHLRFAPWIRNMLTRCVAII

Protein Length: 52

Fln nts: GGAGTTCAACACTGTTTGGCATTGCTCTGCTAGCTTCTGGTCAAAGTTCGACAATAACAGGGACCTATGCTGGACAGTATGTGATGCAGGGATTTTTACATTTACGGTTTGCACCATGGATTAGGAATATGCTTACAAGATGTGTTGCAATAATC

Fln Alignment:

HLKU4M001BBQC9___LFGIALLASGQSSTITGTYAGQYVMQGFLHLRFAPWIRNMLTRCVAII
B8LLH7________________IWAIGLLAAGQSSTITGTYAGQFIMAGFLNLRIKKWLRALITRSFAIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain