SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148921

Length: 252 nt

UniGene Fasta

>sp_v3.0_unigene148921
TTTCAACAGGGATGGGTGCAACTTTGAATGTAGCCAAACCCAAGAAGGGTTCAACAGTAGCAATATTTGGACTTGGCACCGTTGGTCTTGCTGCTGCTGAAGGGGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAACAGTGACAGGTTTGAAAGAGCAAAACTCTTTGGTGTAACGGAATTCTTAAACCCACTGGACTACGACAAGCCTATTCAACAGGTTATTGCTGAAAGAACTGATG

Ace file of the UniGene sp_v3.0_unigene148921

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=7 Tax=Pinaceae RepID=Q43021_PINBN	-	-	3.0e-23	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Alcohol dehydrogenase	-	-	3.968e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alcohol dehydrogenase.	EC:1.1.1.1	-	3.467e-35	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		3.467e-35	%
Sma3	Fatty acid metabolism	00071		3.467e-35	%
Sma3	Glycine, serine and threonine metabolism	00260		3.467e-35	%
Sma3	Tyrosine metabolism	00350		3.467e-35	%
Sma3	Chloroalkane and chloroalkene degradation	00625		3.467e-35	%
Sma3	Naphthalene degradation	00626		3.467e-35	%
Sma3	Retinol metabolism	00830		3.467e-35	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		3.467e-35	%
Sma3	Drug metabolism - cytochrome P450	00982		3.467e-35	%
Sma3	Metabolic pathways	01100		3.467e-35	%
Sma3	Biosynthesis of secondary metabolites	01110		3.467e-35	%
Sma3	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	4.483e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Methane metabolism	00680		4.483e-09	%

Source	Gene names
Sma3	ADH; ADH1; ADH2; ADH3; ADH6; ADH7; Adh; Adh1; Adh1A; Adh1B; Adh1a; Adh2; AdhC1; AdhC2; AdhC3; AdhC4; AdhC5; AdhC6; AdhC7; AdhD; AdhE; GSNOR1; GSVIVT00014300001; GSVIVT00034830001; GSVIVT00034832001; OP_Ba004F03-2; OR_BBa102H20-2; OsI_034290; POPTRDRAFT_71

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G77120.1	ADH1, ADH, ATADH, ATADH1 alcohol dehydrogenase 1 chr1:28975509-28977216 FORWARD LENGTH=379	1.0e-24	80%
RefSeq	Arabidopsis thaliana	NP_177837.1	alcohol dehydrogenase class-P [Arabidopsis thaliana]	1.0e-24	80%
RefSeq	Populus trichocarpa	XP_002328465.1	predicted protein [Populus trichocarpa]	1.0e-25	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADY4

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 83 - 268

Fln protein: STGMGATLNVAKPKKGSTVAIFGLGTVGLAAAEGARIAGASRIIGIDLNSDRFERAKLFGVTEFLNPLDYDKPIQQVIAERTD

Protein Length: 84

Fln nts: TTTCAACAGGGATGGGTGCAACTTTGAATGTAGCCAAACCCAAGAAGGGTTCAACAGTAGCAATATTTGGACTTGGCACCGTTGGTCTTGCTGCTGCTGAAGGGGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAACAGTGACAGGTTTGAAAGAGCAAAACTCTTTGGTGTAACGGAATTCTTAAACCCACTGGACTACGACAAGCCTATTCAACAGGTTATTGCTGAAAGAACTGATG

Fln Alignment:

HLKU4M001BJGHL___STGMGATLNVAKPKKGSTVAIFGLGTVXXXXXXXXXXXXXXXXXXXDLNSDRFERAKLFGVTEFLNPLDYDKPIQQVIAERTD
D5ADY4________________STGMGATLNAAKPKKGSTVAVFGLGGVGLAAAEGARIAGASRIIGVDLNSDRFEEAKLFGVTEFINPRDYEKPVQQVIAERTD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain