SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148825

Length: 122 nt

UniGene Fasta

>sp_v3.0_unigene148825
CTCCTTTCTTTACATGAGAATCAGCAATGTCTATATTGTCATTGTAGTCAGCAGCAATGCAAATGCAGCTTGTGCTTTGAAATTCATTGTGGAGGCAGTAGGACTTTTCAAATCATATTTTG

Ace file of the UniGene sp_v3.0_unigene148825

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	Gene names
Sma3	AP2; At5g46630; GSVIVT00007531001; GSVIVT00015802001; OJ1743_B12.40; Os02g0690700; OsI_08536; OsJ_07994; PHYPADRAFT_209451; PHYPADRAFT_220538; POPTRDRAFT_836330; POPTRDRAFT_836929; RCOM_0864950; VITISV_035642;

Source	GOs	Term	Type	Identity
Sma3	clathrin coat of trans-Golgi network vesicle	GO:0030130	Cellular Component	-
Sma3	clathrin adaptor complex	GO:0030131	Cellular Component	-
Sma3	clathrin coat of coated pit	GO:0030132	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin adaptor, mu subunit	IPR001392	-	-
Sma3	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	-
Sma3	Clathrin coat associated protein AP-50	IPR015629	-	-
Sma3	Clathrin, heavy chain, linker/propeller domain	IPR016025	-	-
Sma3	Clathrin adaptor, mu subunit, conserved site	IPR018240	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR65

Fln msg: Distance to subject end: 342 aas, your sequence is shorter than subject: 40 - 438

Fln protein: SFLYMRISNVYIVIVVSSNANAACALKFIVEAVGLFKSYF

Protein Length: 41

Fln nts: CTCCTTTCTTTACATGAGAATCAGCAATGTCTATATTGTCATTGTAGTCAGCAGCAATGCAAATGCAGCTTGTGCTTTGAAATTCATTGTGGAGGCAGTAGGACTTTTCAAATCATATTTTG

Fln Alignment:

HLKU4M001AMG0Y___SFLYMRXXXXXXXXXXXXXXXAACALKFIVEAVGLFKSYF
B8LR65________________SFLYMRISNVYIVIVVSSNANAACALKFVVEAVALFKSYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain