SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148470

Length: 371 nt

UniGene Fasta

>sp_v3.0_unigene148470
ACTTTATTTCCGACATATATTGGTCCCCTAGCACCTGCTGGGGAAGGTCTTGCTCTAATATTGATGCAGGTTGCAGTTCATCTCGCTGTAATTTTGGGAGTTGGGAGAGTTCTAAGGTTGGAGCAAAAGGAATTGTTGTTGGCCTCAAATGCAAATGTTGGAGGCCCTACAACAGCTTGCGGAATGGCTACTGCAAAAGGTTGGAAGACATTAATTGTCCCTGGGATTCTTGCTGGAATATATGGAATATCAATTGCAACATTGCTTGCAATTGTGTTTGGAGTGGCTGTTTTGAAACATATGTGAAGTATGGGAGCAGGCAATTATTGTTTCCATATCATCTCATTCGCTATCTTTGCAATCATCTATGC

Ace file of the UniGene sp_v3.0_unigene148470

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF819 domain containing protein	-	-	7.0e-26	53%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	0.0	56%
Sma3	Chromosome undetermined scaffold_91, whole genome shotgun sequence	-	-	8.0e-06	-

Source	Gene names
Sma3	At5g24000; At5g52540; At5g52540/F6N7.1; GSVIVT00037709001; GSVIVT00037710001; Os06g0107100; OsJ_19840; P0644B06.44-1; P0644B06.44-2; PHYPADRAFT_43710; POPTRDRAFT_198745; POPTRDRAFT_567141; POPTRDRAFT_920081; POPTRDRAFT_936309; RCOM_1582790; VITISV_024875;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF819	IPR008537	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52540.1	Protein of unknown function (DUF819) chr5:21321672-21323702 REVERSE LENGTH=461	1.0e-36	55%
RefSeq	Arabidopsis thaliana	NP_200067.1	uncharacterized protein [Arabidopsis thaliana]	2.0e-36	55%
RefSeq	Populus trichocarpa	XP_002305244.1	predicted protein, partial [Populus trichocarpa]	2.0e-37	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9PB60

Fln msg: your sequence is shorter than subject: 102 - 269

Fln protein: TLFPTYIGPLAPAGEGLALILMQVAVHLAVILGVGRVLRLEQKELLLASNANVGGPTTACGMATAKGWKTLIVPGILAGIYGISIATLLAIVFGVAVLKHM*

Protein Length: 103

Fln nts: ACTTTATTTCCGACATATATTGGTCCCCTAGCACCTGCTGGGGAAGGTCTTGCTCTAATATTGATGCAGGTTGCAGTTCATCTCGCTGTAATTTTGGGAGTTGGGAGAGTTCTAAGGTTGGAGCAAAAGGAATTGTTGTTGGCCTCAAATGCAAATGTTGGAGGCCCTACAACAGCTTGCGGAATGGCTACTGCAAAAGGTTGGAAGACATTAATTGTCCCTGGGATTCTTGCTGGAATATATGGAATATCAATTGCAACATTGCTTGCAATTGTGTTTGGAGTGGCTGTTTTGAAACATATGTGA___AGTATGGGAGCAGGCAATTATTGTTTCCATATCATCTCATTCGCTATCTTTGCAATCATCTATGC

Fln Alignment:

HLKU4M001AIE0Y___TLFPTYIGPLAPAGEGLALILMQV-----------------------------AVHLAVILGVGRVLRLEQKELLLASNANVGGPTTACGMATAKGWKTLIVPGILAGIYGISIATLLAIVFGVAVLKHM
A9PB60________________TAFPTQFNHLAPSGEALALILMQVFFAVVGASGNVWNVINTAPSIFLFALVQIAIHLAVILGLGKLFRFDQKLLLIASNANVGGPTTACGMATAKGWSSLVVPGILAGIFGIAIATFLGIAFGANVLQYM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain