SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147691

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene147691
GCTTGGACAGAGATTTGGAGCTCAGAACGTGAGAACTGGTTCTGCGAGCAGGAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAGGTAATTGGCCGTACTGGACTCAAGTTTAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTGGATGATCAGAACCGGCTGATCATGAGGAATGTGAAAGGACCTGTCAGAGAGGGTGATGTCCTTACCCTTCTAGAATCCGAAA

Ace file of the UniGene sp_v3.0_unigene147691

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT	-	-	2.0e-14	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Ribosomal protein S28e	-	-	1.246e-08	-

Source	Gene names
Sma3	At3g10090; At5g03850; At5g64140; CHLREDRAFT_144646; F8F6_60; GSVIVT00025456001; GSVIVT00038765001; MED24.15; MHJ24.12; MICPUN_51733; MtrDRAFT_AC147482g43v2; OSTLU_119484; Os03g0167100; Os10g0411700; OsI_10164; OsI_33537; OsJ_09549; OsJ_31495; Ot07g03500;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S28e	IPR000289	-	0.0	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64140.1	RPS28 ribosomal protein S28 chr5:25667529-25667723 REVERSE LENGTH=64	8.0e-16	64%
RefSeq	Arabidopsis thaliana	NP_201219.1	40S ribosomal protein S28-2 [Arabidopsis thaliana]	1.0e-15	64%
RefSeq	Populus trichocarpa	XP_002311925.1	predicted protein [Populus trichocarpa]	2.0e-17	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NJT8

Fln msg: STOP codon was not found. Distance to subject end: 7 aas,

Fln protein: MDTGVKLAVVVKVIGRTGLKFRSSYTGPSEVLDDQNRLIMRNVKGPVREGDVLTLLESE

Protein Length: 60

Fln nts: GCTTGGACAGAGATTTGGAGCTCAGAACGTGAGAACTGGTTCTGCGAGCAGGAAATC_-_ATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAGGTAATTGGCCGTACTGGACTCAAGTTTAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTGGATGATCAGAACCGGCTGATCATGAGGAATGTGAAAGGACCTGTCAGAGAGGGTGATGTCCTTACCCTTCTAGAATCCGAAA

Fln Alignment:

AllPine_a_rep_c122742___MDTGVKLAVVVKVIGRTGLKFRSSYTGPSEVLDDQNRLIMRNVKGPVREGDVLTLLESE
A9NJT8________________MDTGVKLAVVVKVIGRTGSRGQVTQVRV-KFLDDQNRLIMRNVKGPVREGDVLTLLESE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain