SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146995

Length: 152 nt

UniGene Fasta

>sp_v3.0_unigene146995
CGTTCTTCAGTTCTTCTTCTTTCTTGCGCTCGCCACTTATATGCAGAACTGAAGAACGACAAGTGGCACCGCATTGAGCGCTCTCACGGGAAATTTCTTCGGCGTTTCCGCCTGCCGGAAAATGCCAAGGTGGAGGAGGTGAAGGCGACAAT

Ace file of the UniGene sp_v3.0_unigene146995

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class I cytosolic small heat shock protein n=1 Tax=Potentilla discolor RepID=E5FY23_9ROSA	-	-	6.0e-11	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Heat-shock protein, putative	-	-	8.797e-26	-

Source	Gene names
Sma3	At1g53540; At2g29500; At3g46230; At5g59720; BcHSP; CJHSP17; F12M12_200; F22G10.20; GSVIVT00001312001; GSVIVT00018355001; GSVIVT00018357001; GSVIVT00018362001; GSVIVT00018363001; GSVIVT00018364001; GSVIVT00018365001; GSVIVT00024197001; HS6871; HSP; HSP17.3

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59720.1	HSP18.2 heat shock protein 18.2 chr5:24062632-24063117 FORWARD LENGTH=161	2.0e-16	68%
RefSeq	Arabidopsis thaliana	NP_200780.1	heat shock protein 18.2 [Arabidopsis thaliana]	3.0e-16	68%
RefSeq	Populus trichocarpa	XP_002325979.1	predicted protein [Populus trichocarpa]	8.0e-16	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQJ4

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 50 - 160

Fln protein: RSSVLLLSCARHLYAELKNDKWHRIERSHGKFLRRFRLPENAKVEEVKAT

Protein Length: 51

Fln nts: CGTTCTTCAGTTCTTCTTCTTTCTTGCGCTCGCCACTTATATGCAGAACTGAAGAACGACAAGTGGCACCGCATTGAGCGCTCTCACGGGAAATTTCTTCGGCGTTTCCGCCTGCCGGAAAATGCCAAGGTGGAGGAGGTGAAGGCGACAAT

Fln Alignment:

AllPine_a_rep_c121453___VLLLSCARHLYAELKNDKWHRIERSHGKFLRRFRLPENAKVEEVKAT
B8LQJ4________________VLKISGERKKEEEQKNDKWHRIERSHGKFLRRFRLPENAKVEEVKAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain