SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146391

Length: 1029 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene146391

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipase A1-Igamma1 [Arabidopsis thaliana] sp\|Q941F1.2\|PLA15_ARATH RecName: Full=Phospholipase A1-Igamma1, chloroplastic; Flags: Precursor gb\|AAF63138.1\|AC011001_8 Similar to lipases [Arabidopsis thaliana] gb\|AAM20450.1\| lipase, putative [Arabidopsis	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Triacylglycerol lipase, putative	-	-	4.162e-15	-

Source	Gene names
Sma3	At1g05800; At1g06800; At1g30370; At1g51440; At2g30550; At2g31690; CLIP; DAD1F; DGL; F4H5.11; F5D21.19; GSVIVT00023845001; GSVIVT00024586001; GSVIVT00028361001; GSVIVT00028362001; GSVIVT00028363001; GSVIVT00033599001; LOC_Os11g04940; LOC_Os11g19290; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	thylakoid membrane organization	GO:0010027	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	triglyceride catabolic process	GO:0019433	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G06800.1	PLA-I{gamma}1 alpha/beta-Hydrolases superfamily protein chr1:2089538-2091443 REVERSE LENGTH=515	59%
RefSeq	Arabidopsis thaliana	NP_849603.1	phospholipase A1-Igamma1 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002313345.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE3

Fln msg: your sequence is shorter than subject: 269 - 554

Fln protein: DCRFCKSSARDQVLSELRQLLQKYRGEQLSITITGHSLGSALAVLSAYDIAEMGLNRSESDDQAEPIPITVFSFAGPRVGNAAFKDRCEELGVKFLRVVNVHDEVPKVPGILFNEKFKIMRKWIDKLPWSYSHVGVELALDHTHSPFLKRTNDLSCFHNLEVLLHLLDGYHGPEQRFHLSSGRDPAMVNKSCDFLKEHYLVPPFWRQDANKGMLQNSEGRWVQPDRIRIIEERHTDTDHNESSHHSDNQIRSDIAINGHPQPSSQHHL*

Protein Length: 270

Fln nts: GGGATTGCCGGTTCTGTAAAAGCAGCGCGCGGGATCAAGTGCTGTCGGAACTCCGGCAGTTGCTGCAGAAATACAGAGGCGAGCAGCTGAGCATCACGATCACGGGTCACAGCCTGGGGAGCGCGCTGGCCGTACTTAGCGCCTACGATATCGCAGAGATGGGGTTGAACCGATCGGAGAGCGACGATCAGGCGGAACCGATTCCGATAACGGTGTTCTCGTTCGCGGGGCCGAGGGTGGGAAACGCGGCTTTCAAGGATCGGTGCGAGGAACTGGGCGTCAAGTTTCTGAGAGTGGTGAACGTGCACGATGAAGTGCCGAAGGTCCCCGGGATTCTGTTCAACGAAAAGTTCAAGATCATGAGGAAGTGGATCGATAAGCTTCCGTGGAGTTACAGTCATGTAGGTGTGGAGCTGGCTCTTGATCACACACATTCCCCTTTCTTAAAGCGCACTAACGATCTCTCCTGCTTTCATAATCTGGAGGTCCTTCTGCACTTACTCGACGGATATCATGGTCCGGAACAGCGCTTCCATCTGTCTTCCGGCAGAGATCCTGCTATGGTGAATAAGTCATGTGATTTTCTAAAGGAACACTACCTGGTTCCTCCCTTCTGGAGACAAGACGCGAACAAAGGAATGCTCCAGAACTCGGAGGGCAGGTGGGTTCAACCTGATAGAATCAGAATCATCGAAGAACGCCATACAGATACGGATCACAATGAGAGTAGCCATCATTCTGATAATCAGATCCGGTCTGACATCGCCATTAATGGCCATCCTCAGCCGTCATCGCAGCACCATCTTTAG___TGTTTTCATCATAGCTTTTCTAGAAACATATAAAGAATGCATAGTAAGTCTCGTTGCTGTAAAGTATTGTGATGACGTGGGATCTTGTTTTGTGGACCTCCACTTCTCTACATAAACATTGAAGTAGTTGTCTATAACGCGACTTTTTGAAAGTCTTTTCGGCAGGTTTTTCCGGGTTAAAATCTGGCAGCAAATTATTGGAATCTCAAGTTTGATAGCT

Fln Alignment:

AllPine_a_rep_c120109___DCRFCKSSARDQVLSELRQLLQKYRGEQLSITITGHSLGSALAVLSAYDIAEMGLNRSESDDQAEPIPITVFSFAGPRVGNAAFKDRCEELGVKFLRVVNVHDEVPKVPGILFNEKFKIMRKWIDKLPWSYSHVGVELALDHTHSPFLKRTNDLSCFHNLEVLLHLLDGYHGPEQRFHLSSGRDPAMVNKSCDFLKEHYLVPPFWRQDANKGMLQNSEGRWVQPDRIRIIEERHTDTDHNESSHHSDNQIRSDIAINGHPQPS
B8LKE3________________DCRFCKSSARDQVLSELRRLLQKYKGEQLSITITGHSLGSALAMLSAYDIAELGLNQSESDDRAESIPITVFSFAGPRVGNAAFKDRCEELGLKFLRVVNVHDIVPKVPGILFNETFKMMKQWIDKLPWSYCHVGVKLVLDHTQSPFLKPTNDSSCFHNLEAHLHLLDGYHGRGQRFCLTSRRDPALVNKSCDFLKEHHLVPPFWRQDANKGLIQNSEGRWVQPERIRIIEESHMDPDHHETVSHSENQVRPDVAINGHSQPS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
195		33	66		0.997452
265	25		75		0.996473
269			75	25	0.996473
270			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain