SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146247

Length: 512 nt

UniGene Fasta

>sp_v3.0_unigene146247
CGTCGTGACCTTGGCTGTCACTCATGTATGGAGCCTGTTGAAAAGTGTTTGAGAGATGTAGATGGATAAAAGCTCTATCCATGATGTTGTTTTGGTTGGTGGGTCTACTAGAATTCCCAAAGTGCAACAGTTGTTGCAGGACTTCTTTAATGGGAAAGAGCTCTGCAAGAGCATTAACCCCGATGAGGCTGTTGCCTATGGTGCTGCAGTGCAGGCCGCTATTCTAAGCGGAGAAGGCAATGAGAAGATGGTTCAGGAAGCTGAGAAGTACAAGTCTGAGGACGAAGAGCATAAGAGGAAGGTTGAGTCCAAAAACTCGTTAGAGAACTATGCTTCCTGAACCATCTTCTCAATCTCTTCCTTGCTCAACCTACCCTTGTCATTAGTGATTGTAATCTTGTTCTTCTGTCCAGTGGTCTTGTCCTCAGCCGAAACATTCAAGATACCATTGGCATCAATGTCAAAGCACACTGTGATTTGAGGAACACCTCTGGGAGCAAGTTTGAATTGTC

Ace file of the UniGene sp_v3.0_unigene146247

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock 70kDa protein 1/8 n=5 Tax=rosids RepID=F4KCE5_ARATH	-	-	4.0e-38	82%
FL-Next	tr=Heat shock 70kDa protein 1/8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	93%
Sma3	Heat shock protein 70	-	-	1.251e-34	-

Source	Gene names
Sma3	At1g16030; At1g56410; At3g09440; At3g12580; At5g02490; At5g02500; At5g28540; At5g42020; BIP; BIP1; BIP2; BIP3; BIP4; BIP5; BIP8; BIPE2; BIPE3; BLP4; BiP; BiPD; Bip; CHLREDRAFT_185673; F11F8; F13N6.9; F3L24.33; F7G19.5; GRP78/BiP; GSVIVT00006687001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12580.1	HSP70, ATHSP70 heat shock protein 70 chr3:3991487-3993689 REVERSE LENGTH=650	4.0e-29	100%
RefSeq	Arabidopsis thaliana	NP_001119156.1	heat shock 70kDa protein 1/8 [Arabidopsis thaliana]	2.00386e-43	93%
RefSeq	Populus trichocarpa	XP_002332588.1	predicted protein [Populus trichocarpa]	5.0e-29	100%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4KCE5

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 113 - 521

Fln protein: VVTLAVTHVWSLLKSV*EM*MDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKMVQEAEKYKSEDEEHKRKVESKNSLENYAS*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTATGGAGCCTGTTGAAAAGTGTTTGAGAGATGTAGATGGATAAAAGCTCTATCCATGATGTTGTTTTGGTTGGTGGGTCTACTAGAATTCCCAAAGTGCAACAGTTGTTGCAGGACTTCTTTAATGGGAAAGAGCTCTGCAAGAGCATTAACCCCGATGAGGCTGTTGCCTATGGTGCTGCAGTGCAGGCCGCTATTCTAAGCGGAGAAGGCAATGAGAAGATGGTTCAGGAAGCTGAGAAGTACAAGTCTGAGGACGAAGAGCATAAGAGGAAGGTTGAGTCCAAAAACTCGTTAGAGAACTATGCTTCCTGAACCATCTTCTCAATCTCTTCCTTGCTCAACCTACCCTTGTCATTAGTGATTGTAATCTTGTTCTTCTGTCCAGTGGTCTTGTCCTCAGCCGAAACATTCAAGATACCATTGGCATCAATGTCAAAGCACACTGTGATTTGAGGAACACCTCTGGGAGCAAGTTTGAATTGTC

Fln Alignment:

AllPine_a_rep_c119720___MDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKMVQEAEKYKSEDEEHKRKVESKNSLENYA
F4KCE5________________MDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQGAILSGEGNEKMVQEAEKYKSEDEEHKKKVEAKNALENYA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain