SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145176

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene145176
CGTCGTGACCTTGGCTGTCACTTAGGAGCATGTATAATGCTGAAAAGCGGGGGAAACGACAAGTGATGATCAGACCATCATCAAAAGTTATCATCAAGTTCCTTCAAGTCATGCAAAAGCATGGCTACATTGGAGAGTTTGAGCTTGTCGACGATCACAGAGCAGGTAGTATCTAATTTGAACTCATTGAAATTAAAGGACACAGAACAGAATAAAGAAGTTGACATTAAGCATGAAGAAAT

Ace file of the UniGene sp_v3.0_unigene145176

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S15a n=1 Tax=Phytophthora infestans T30-4 RepID=D0NUU4_PHYIT	-	-	2.0e-19	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	AT1G07770; At1g07770; At2g39590; At3g46040; CHLREDRAFT_59755; F12L6.25; F12M12_10; MICPUCDRAFT_31862; MICPUN_107532; OJ1559_F09.109; OSTLU_40222; Os02g0478600; Os07g0208000; OsI_07208; OsI_25335; OsJ_06729; OsJ_23513; Ot01g02370; P0527E02.35; PHATRDRAFT_2

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8	IPR000630	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59850.1	Ribosomal protein S8 family protein chr5:24112499-24113084 REVERSE LENGTH=130	1.0e-26	85%
RefSeq	Arabidopsis thaliana	NP_172256.1	40S ribosomal protein S15a-1 [Arabidopsis thaliana]	1.0e-26	85%
RefSeq	Populus trichocarpa	XP_002304434.1	predicted protein [Populus trichocarpa]	2.0e-27	87%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN71

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 46 aas, atg_distance in limit (1-15): atg_distance = 5, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 49 - 130

Fln protein: MYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGSI*

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTTAGGAGC_-_ATGTATAATGCTGAAAAGCGGGGGAAACGACAAGTGATGATCAGACCATCATCAAAAGTTATCATCAAGTTCCTTCAAGTCATGCAAAAGCATGGCTACATTGGAGAGTTTGAGCTTGTCGACGATCACAGAGCAGGTAGTATCTAATTTGAACTCATTGAAATTAAAGGACACAGAACAGAATAAAGAAGTTGACATTAAGCATGAAGAAAT

Fln Alignment:

AllPine_a_rep_c116860___SLRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGSI*FEL
A9NN71________________ALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain