SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144831

Length: 517 nt

UniGene Fasta

>sp_v3.0_unigene144831
AGAGAATCTAGGGACAACCTGTTTTTGTTTCCATGATGGCGCTGCTGCGACCCGAACCACAGACAGGTTGTCCCTAGATTCTCTGGACTAAAGGCAGTATCATTTGGACAACAAAGATTTGATTTTCCATCATTTCAATCTTCACAATGCACTTCCGGTGCTTTGAAAGTAGTTTGTGCGGCCAAGCCAGAGACTCTCAACAAAGTATGTGATATTGTGAAGAGTCAGTTAGCATTATCAGATGATAAGCCTTTGACTCCTGAATCCAAATTTTCTGATTTGGGTGCTGATTCTCTTGATACGGTAGAGATAGTAATGGCTCTTGAGGAGGAATTCAAAATCACTGTCGAAGAAGAAAATGCTGGGAACATTACAACTGTTCAGGAAGCAGCCGATTTGATAGAAAGGCTTGCCGGGAAGGTTCTGCAGCTGAGGCAGTTAAATCTTGAGCGGTGTATGCGTGTTACCTAAAGGCTATCCAAGTGCACATCTAACGTCATCTGTTAGTCATTGTGGC

Ace file of the UniGene sp_v3.0_unigene144831

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl carrier protein n=3 Tax=Picea sitchensis RepID=A9NK69_PICSI	-	-	96%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Acyl carrier protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	acyl carrier activity	GO:0000036	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	phosphopantetheine binding	GO:0031177	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25050.2	ACP4 acyl carrier protein 4 chr4:12870178-12871024 FORWARD LENGTH=149	1.0e-31	55%
RefSeq	Arabidopsis thaliana	NP_194235.1	acyl carrier protein 4 [Arabidopsis thaliana]	4.0e-35	61%
RefSeq	Populus trichocarpa	XP_002328387.1	predicted protein [Populus trichocarpa]	2.0e-37	57%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK69

Fln msg: atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region,

Fln protein: WRCCDPNHRQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLNKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKITVEEENAGNITTVQEAADLIERLAGKVLQLRQLNLERCMRVT*

Protein Length: 146

Fln nts: AGAGAATCTAGGGACAACCTGTTTTTGTTTCCATGATGGCGCTGCTGCGACCCGAACCACAGACAGGTTGTCCCTAGATTCTCTGGACTAAAGGCAGTATCATTTGGACAACAAAGATTTGATTTTCCATCATTTCAATCTTCACAATGCACTTCCGGTGCTTTGAAAGTAGTTTGTGCGGCCAAGCCAGAGACTCTCAACAAAGTATGTGATATTGTGAAGAGTCAGTTAGCATTATCAGATGATAAGCCTTTGACTCCTGAATCCAAATTTTCTGATTTGGGTGCTGATTCTCTTGATACGGTAGAGATAGTAATGGCTCTTGAGGAGGAATTCAAAATCACTGTCGAAGAAGAAAATGCTGGGAACATTACAACTGTTCAGGAAGCAGCCGATTTGATAGAAAGGCTTGCCGGGAAGGTTCTGCAGCTGAGGCAGTTAAATCTTGAGCGGTGTATGCGTGTTACCTAA___AGGCTATCCAAGTGCACATCTAACGTCATCTGTTAGTCATTGTGGC

Fln Alignment:

AllPine_a_rep_c115738___NHRQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLNKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKITVEEENAGNITTVQEAADLIERLAG
A9NK69________________NQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLSKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERLAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain