SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144668

Length: 346 nt

UniGene Fasta

>sp_v3.0_unigene144668
AATGTTCGCAATACAAAAACGGAGTATGTATCATTTTGTCCCATCATGTGGTCCGCACTCTGTTTGACCTCCAAGAAATAAGTGCAGAGATTCGGGCGAAAACACAGCATCTTCCTGGTGTTTCGATTGCTATCATGGGCTGCATTGTGAATGGTCCTGGAGAGATGGCAGATGCAGACTTTGGATATGTTGGTGGGTCACCAGGAAAGATTGATCTCTATGTTGGAAAGGTACCTTCTTTTTCTGTTCGCTTCTACACTGAAACCTCCTGCTATACTTTTTGTGAGAGACTTGTTAATATATGCAGACAATATCTCAACTATAGACTTTCAAATGAAATTCTCTC

Ace file of the UniGene sp_v3.0_unigene144668

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase n=1 Tax=Ginkgo biloba RepID=A9CBE3_GINBI	-	-	2.0e-26	96%
FL-Next	Isoform 2 of 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG	-	-	0.0	96%
Sma3	Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	-	-	9.865e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 1.17.7.1.	EC:1.17.4.3	-	2.663e-23	-

Source	Gene names
Sma3	At5g60600; CHLREDRAFT_55268; GSVIVT00024531001; GcpE; HDS; HDS1; HDS3; HbHDS; Hds1; MICPUCDRAFT_45326; MICPUN_95921; OJ1669_F01.30; OSTLU_12863; Os02g0603800; OsI_07973; OsJ_07430; Ot09g00990; PHYPADRAFT_130936; PHYPADRAFT_233105; PHYPADRAFT_55802; POPTRD

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	GO:0046429	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	systemic acquired resistance, salicylic acid mediated signaling pathway	GO:0009862	Biological Process	-
Sma3	terpenoid biosynthetic process	GO:0016114	Biological Process	-
Sma3	viral assembly, maturation, egress, and release	GO:0019067	Biological Process	-
Sma3	isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0019288	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type	IPR004588	-	0.0	-
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical	IPR017178	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS 4-hydroxy-3-methylbut-2-enyl diphosphate synthase chr5:24359447-24363274 FORWARD LENGTH=741	1.0e-31	96%
RefSeq	Arabidopsis thaliana	NP_200868.2	4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Arabidopsis thaliana]	2.0e-31	96%
RefSeq	Populus trichocarpa	XP_002328295.1	predicted protein [Populus trichocarpa]	5.0e-31	94%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: F4K0E8-2

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 114 - 740

Fln protein: CSQYKNGVCIILSHHVVRTLFDLQEISAEIRAKTQHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKVPSFSVRFYTETSCYTFCERLVNICRQYLNYRLSNEIL

Protein Length: 115

Fln nts: AATGTTCGCAATACAAAAACGGAGTATGTATCATTTTGTCCCATCATGTGGTCCGCACTCTGTTTGACCTCCAAGAAATAAGTGCAGAGATTCGGGCGAAAACACAGCATCTTCCTGGTGTTTCGATTGCTATCATGGGCTGCATTGTGAATGGTCCTGGAGAGATGGCAGATGCAGACTTTGGATATGTTGGTGGGTCACCAGGAAAGATTGATCTCTATGTTGGAAAGGTACCTTCTTTTTCTGTTCGCTTCTACACTGAAACCTCCTGCTATACTTTTTGTGAGAGACTTGTTAATATATGCAGACAATATCTCAACTATAGACTTTCAAATGAAATTCTCTC

Fln Alignment:

AllPine_a_rep_c115209___RTLFDLQEISAEIRAKTQHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGK
F4K0E8-2______________RTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain