SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144491

Length: 845 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene144491

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L3 [Solanum lycopersicum]	-	-	0.0	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Ribosomal protein L3	-	-	1.788e-17	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; CHLREDRAFT_126189; Csf-3; EMB2207; GSVIVT00010223001; GSVIVT00019342001; GSVIVT00031743001; GSVIVT00035280001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; Ot01g0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L3	IPR000597	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Ribosomal protein L11, bacterial-type	IPR006519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G43170.1	ARP1, emb2207, RPL3A, RP1 ribosomal protein 1 chr1:16266992-16268631 FORWARD LENGTH=389	85%
RefSeq	Arabidopsis thaliana	NP_001185148.1	60S ribosomal protein L3-1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002302168.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
17	75		25		0.99649
19		25	75		0.99649
20	25		75		0.99649
21		25	75		0.99649
22			75	25	0.996486
23	75	25			0.99649
27	11			88	0.923564
28			50	50	1.0
29		40	60		1.0
30			60	40	1.0
31		40	60		1.0
59	33		66		1.0
69		88		11	0.923564
169	90		10		0.903297
304	11		88		0.924009
305	88		11		0.923564
307	12	87			0.992554
310		12		87	0.992554
313	87		12		0.992554
316		87		12	0.992554
323			87	12	0.992554
358			85	14	0.993533
361		20	80		0.995505
363		20	80		0.995505
370	80	20			0.995505
376	25			75	0.99649
595	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain