SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144179

Length: 517 nt

UniGene Fasta

>sp_v3.0_unigene144179
CGTCGTGACCTTGGCTGTCACTCATTTTTGTGACATGTCTTCAGTTCAGAAGTGGTCTATCACTAACTGTCATCTTCTTCAAAAATTACCTGATGACTTGGGGAGGCTCAACTCTTTAAGAATGTTAAGGGTATCTGCATGTGTAGGTCTGAAAGAGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTAGAATATCTTGACATTTCCCTTTGCGAGTGCTTAAAAGAACTTCCGGAAGAAATAGGACAGTTGAGGAAACTTGAAGAGCTTAACATGACAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTCGGAGGGATGACATCTCTGAAGCATGTTACCTGCGATGAGAAGATTGGGCAGCAATGGAATCGTGTCAAGAGCTCTTTCATGATGAAGGTTATAGTTGAAGTTGCGGAAGCACACTTCAGCTTGGATTGGCTCAATGATTGACATCCAATCTAGTGATGGCAATGCGCTGTTTATTTCAGTTTATATGTCTCGTTAACTTTA

Ace file of the UniGene sp_v3.0_unigene144179

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Nbs-lrr resistance protein	-	-	4.938e-06	-

Source	Gene names
Sma3	GSVIVT00014747001; LOC_Os12g39620; LRR1; Os12g0586000; OsI_38915; OsJ_36681; POPTRDRAFT_710696; POPTRDRAFT_764587; POPTRDRAFT_826770; RCOM_1591970; RGC-CC_1; VITISV_006255;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327103.1	nbs-lrr resistance protein [Populus trichocarpa]	2.0e-34	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKS2

Fln msg: your sequence is shorter than subject: 152 - 244

Fln protein: VVTLAVTHFCDMSSVQKWSITNCHLLQKLPDDLGRLNSLRMLRVSACVGLKELPASIGKLGKLEYLDISLCECLKELPEEIGQLRKLEELNMTECSRLRKLPKSVGGMTSLKHVTCDEKIGQQWNRVKSSFMMKVIVEVAEAHFSLDWLND*

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGTGACATGTCTTCAGTTCAGAAGTGGTCTATCACTAACTGTCATCTTCTTCAAAAATTACCTGATGACTTGGGGAGGCTCAACTCTTTAAGAATGTTAAGGGTATCTGCATGTGTAGGTCTGAAAGAGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTAGAATATCTTGACATTTCCCTTTGCGAGTGCTTAAAAGAACTTCCGGAAGAAATAGGACAGTTGAGGAAACTTGAAGAGCTTAACATGACAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTCGGAGGGATGACATCTCTGAAGCATGTTACCTGCGATGAGAAGATTGGGCAGCAATGGAATCGTGTCAAGAGCTCTTTCATGATGAAGGTTATAGTTGAAGTTGCGGAAGCACACTTCAGCTTGGATTGGCTCAATGATTGA___CATCCAATCTAGTGATGGCAATGCGCTGTTTATTTCAGTTTATATGTCTCGTTAACTTTA

Fln Alignment:

AllPine_a_rep_c113493___CDMSSVQKWSITNCHLLQKLPDDLGRLNSLRMLRVSACVGLKELPASIGKLGKLEYLDISLCECLKELPEEIGQLRKLEELNMTECSRLRKLPKSVGGMTSLKHVTCDEKIGQQWNRVK-SSFMMKVIVEVAEAHFSLDWLN
A9NKS2________________CDMSSVQKWSITNCHLLQKLPDDLGRLSSLRMLRVSACLGLKELPTSIGKLGKLEYLDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLRSLKHVICDEKIGQQWSRVKSSSAIMDLRIEVVEAHFSLDWLD

SNPs (tot: 3)

Position	A %	G %	T %	Probability
346		87	12	0.992554
372		12	87	0.992554
416	16	83		0.994513

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain