SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143945

Length: 252 nt

UniGene Fasta

>sp_v3.0_unigene143945
ATCAGATATCATAATGCGCATGCTGAAGACAATGAATATGTAATGCGCAACTTGGCTTGGGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGAGCATAACTAAATTGCGTCAGAAGGTGAAGGAGCAACAAGAGCGTGTAGGGAAAAAGTTACATATCGTTGCCACAAGAGCTGGAAACGGCTATCAAGACTCGGATTCAGAAAGGTTGATGAAGGAGCAA

Ace file of the UniGene sp_v3.0_unigene143945

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cholinephosphate cytidylyltransferase [Pisum sativum]	-	-	3.0e-14	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Choline-phosphate cytidylyltransferase B	-	-	1.027e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Choline-phosphate cytidylyltransferase.	EC:2.7.7.15	-	5.709e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Phosphonate and phosphinate metabolism	00440	5.709e-19	%
Sma3	Glycerophospholipid metabolism	00564	5.709e-19	%
Sma3	Metabolic pathways	01100	5.709e-19	%

Source	Gene names
Sma3	At2g32260; AtCCT2; CCT; CPCT; LOC_Os10g42790; OSJNBa0056G17.15; OSJNBa0073A21.13; Os02g0173500; Os08g0161800; Os10g0578900; OsI_06041; OsI_27913; OsI_34790; OsJ_05570; OsJ_26135; OsJ_32595; P0577B11.124; PHYPADRAFT_33411; PHYPADRAFT_33429; PHYPADRAFT_4627

Source	GOs	Term	Type	Identity
Sma3	choline-phosphate cytidylyltransferase activity	GO:0004105	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32260.1	ATCCT1, CCT1 phosphorylcholine cytidylyltransferase chr2:13697645-13700241 FORWARD LENGTH=332	3.0e-19	57%
RefSeq	Arabidopsis thaliana	NP_180785.1	phosphorylcholine cytidylyltransferase [Arabidopsis thaliana]	4.0e-19	57%
RefSeq	Populus trichocarpa	XP_002303347.1	predicted protein, partial [Populus trichocarpa]	2.0e-22	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQQ2

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 84 - 337

Fln protein: IRYHNAHAEDNEYVMRNLAWGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEQQERVGKKLHIVATRAGNGYQDSDSERLMKEQ

Protein Length: 85

Fln nts: ATCAGATATCATAATGCGCATGCTGAAGACAATGAATATGTAATGCGCAACTTGGCTTGGGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGAGCATAACTAAATTGCGTCAGAAGGTGAAGGAGCAACAAGAGCGTGTAGGGAAAAAGTTACATATCGTTGCCACAAGAGCTGGAAACGGCTATCAAGACTCGGATTCAGAAAGGTTGATGAAGGAGCAA

Fln Alignment:

AllPine_a_rep_c112753___NEYVMRNLAWGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEQQERVGKKLHIVATRAG
B8LQQ2________________NEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEHQERVGQKLHIVATRAG

SNPs (tot: 3)

Position	A %	C %	G %	Probability
120	66		33	0.997464
121		66	33	0.997464
122	66		33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain