SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143287

Length: 556 nt

UniGene Fasta

>sp_v3.0_unigene143287
ATGGGTCTATGGAGACAATGTAGGTGAATCCGTTATTTTCGGTGACAATAATCCTGCGACATCGAAAGCCAAATTTGGATCATATTGGATAAAAGATGGTAGGGTGGTAGGTGTATTCTTGGAGAGTGGTACTCCTGAAGAAAACAAAGCTATTGCTAAGGTAGCACGTGTGAAGCCTTTGGTTGAAAGCAAGGAGGAACTGATAAAGGATGGGCTGGCATTTGCTTCTAAGATATCCTCGGCTTTCACTTAAATCGGCTTTCTGTTAATTCATCAGCATGCTGCATTACTGTTGGTCTCTGTTCACCTTGGATATATCTGTTGTTTTAGCGTCTGATTGACTTTTGTTATGAGATATTGGATTTGACTTTTGTTATGAGGCATTGGACTTTTAGTCAGGGTGTAGCTACTTCGTTCGTAAATCAAACTCGCTACATATTTTTGCTCTTTTTTTTCCACTGCTGGGATGGCATCTTATTAAACAAGACTATATTATTATTTCGATAAAATGCTCTAAATTGCATTGTTGGTTCCATTGTAACATTATATGAACCTT

Ace file of the UniGene sp_v3.0_unigene143287

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Monodehydroascorbate reductase n=1 Tax=Mesembryanthemum crystallinum RepID=Q93YG1_MESCR	-	-	9.0e-27	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Monodehydroascorbate reductase	-	-	8.40779e-45	-

Source	ECs	Term	Type	e value	Identity
Sma3	Monodehydroascorbate reductase (NADH).	EC:1.6.5.4	-	8.672e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		8.672e-27	%
Sma3	Metabolic pathways	01100		8.672e-27	%

Source	Gene names
Sma3	AFRR; AT3G52880; At3g09940; At3g52880; At5g03630; BO-MDAR 2; F17C15_50; F8J2_50; GSVIVT00021644001; MDAR; MDHAR1; Mdhar1; Mdhar2; Mdhar3; OJ1150_A11.25; OJ1155_H10.27; Os08g0557600; Os09g0567300; OsI_30244; OsI_32437; OsJ_30387; PHYPADRAFT_169501; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisomal matrix	GO:0005782	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	monodehydroascorbate reductase (NADH) activity	GO:0016656	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	0.0	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G09940.1	MDHAR, ATMDAR3, MDAR3, MDAR2 monodehydroascorbate reductase chr3:3056501-3059103 REVERSE LENGTH=441	5.0e-29	66%
RefSeq	Arabidopsis thaliana	NP_001118607.1	monodehydroascorbate reductase (NADH) [Arabidopsis thaliana]	6.0e-29	66%
RefSeq	Populus trichocarpa	XP_002326252.1	predicted protein [Populus trichocarpa]	6.0e-32	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUH7

Fln msg: your sequence is shorter than subject: 84 - 434

Fln protein: WVYGDNVGESVIFGDNNPATSKAKFGSYWIKDGRVVGVFLESGTPEENKAIAKVARVKPLVESKEELIKDGLAFASKISSAFT*

Protein Length: 85

Fln nts: ATGGGTCTATGGAGACAATGTAGGTGAATCCGTTATTTTCGGTGACAATAATCCTGCGACATCGAAAGCCAAATTTGGATCATATTGGATAAAAGATGGTAGGGTGGTAGGTGTATTCTTGGAGAGTGGTACTCCTGAAGAAAACAAAGCTATTGCTAAGGTAGCACGTGTGAAGCCTTTGGTTGAAAGCAAGGAGGAACTGATAAAGGATGGGCTGGCATTTGCTTCTAAGATATCCTCGGCTTTCACTTAA___ATCGGCTTTCTGTTAATTCATCAGCATGCTGCATTACTGTTGGTCTCTGTTCACCTTGGATATATCTGTTGTTTTAGCGTCTGATTGACTTTTGTTATGAGATATTGGATTTGACTTTTGTTATGAGGCATTGGACTTTTAGTCAGGGTGTAGCTACTTCGTTCGTAAATCAAACTCGCTACATATTTTTGCTCTTTTTTTTCCACTGCTGGGATGGCATCTTATTAAACAAGACTATATTATTATTTCGATAAAATGCTCTAAATTGCATTGTTGGTTCCATTGTAACATTATATGAACCTT

Fln Alignment:

AllPine_a_rep_c110404___YGDNVGESVIFGDNNPATSKAKFGSYWIKDGRVVGVFLESGTPEENKAIAKVARVKPLVESKEELIKDGLAFASKI
A9NUH7________________YGDNVGEAIIFGDNNPATPKAKFGSYWIKDGRVVGVFLENGTPEENKAIAKVARLKPLVESKEELIKDGLAFASKI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
196		33	66		0.997452
198	66			33	0.997452
199	66	33			0.997452
200		66	33		0.997452
204		33		66	0.997452
205	66	33			0.997452
206	66			33	0.997452
207	66			33	0.997456
210	66	33			0.997453
214			66	33	0.997455
216	33			66	0.997452
217		33	66		0.997452
218			66	33	0.997452
229			25	75	0.996473
230	75			25	0.996473
231	75	25			0.996473
235	75		25		0.996473
236	25			75	0.996473
240		75		25	0.996473
243	33	66			0.997452
245			25	75	0.996474
343	20	80			0.995493
344	20			80	0.995493
346			20	80	0.995493
384		83		16	0.994512
416	16		83		0.994512
419	50	50			1.0
450		25	25	50	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain