SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143135

Length: 756 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143135

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B	-	-	85%
FL-Next	sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Histone H3	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H3	IPR000164	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65360.1	Histone superfamily protein chr5:26120099-26120509 REVERSE LENGTH=136	100%
RefSeq	Arabidopsis thaliana	NP_563838.1	histone H3 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002299242.1	histone H3 [Populus trichocarpa]	100%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
101	50		50		1.0
157	30	70			1.0
183	9		18	63	0.999997
281		90		10	0.902989
287	30		70		1.0
296		90		10	0.90298
354		71		28	1.0
365	33		66		1.0
368	66			33	1.0
380	88	11			0.923564
395		50	50		1.0
398	50		50		1.0
431		57		42	1.0
437	62	37			1.0
449		42		57	1.0
452		42		57	1.0
458	42		57		1.0
488		16		83	0.994513
575	50		50		1.0
584	50		50		1.0
597		50		50	1.0
605	25			75	0.996478
607	33	66			0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain