SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143076

Length: 370 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene143076
ATGGGCCGAAAAAACCTGTAGAAGAATCGTTTATTTCCGAGGAGGGTGTCTCAGTCAGTTCTACCGAGAATACCTTTGAAGACCTGAAGGTAGATACAGAGGAGAAAGCTAGTGAAGTGCCAAAAGCAGCAAATGGTGTTGCCTATGATGTCGGTAAGAAGTTTCAGAAAGGGGGTGGAAAGAAGAAATCAAGCCAAACTATTGAGATATATAAAGGAGACACTCTGTGGGGACTATCTCGAAAGTATGGGGTTTCAGTTGAAGCAATCAAAGCTGCAAATGGGTTTACAGATGATACCATCTATGCTGGAGAGAAACTTATACTACCCTGATGGGCTTATTGGTTGTGCTTGACGTAACCAATTATGAC

Ace file of the UniGene sp_v3.0_unigene143076 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[M] COG1388 FOG: LysM repeat	-	-	6.0e-07	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Cell wall hydrolase	-	-	9.26e-06	-

Source	Gene names
Sma3	GSVIVT00018780001;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	0.0	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYY7

Fln msg: your sequence is shorter than subject: 110 - 152

Fln protein: GPKKPVEESFISEEGVSVSSTENTFEDLKVDTEEKASEVPKAANGVAYDVGKKFQKGGGKKKSSQTIEIYKGDTLWGLSRKYGVSVEAIKAANGFTDDTIYAGEKLILP*

Protein Length: 111

Fln nts: ATGGGCCGAAAAAACCTGTAGAAGAATCGTTTATTTCCGAGGAGGGTGTCTCAGTCAGTTCTACCGAGAATACCTTTGAAGACCTGAAGGTAGATACAGAGGAGAAAGCTAGTGAAGTGCCAAAAGCAGCAAATGGTGTTGCCTATGATGTCGGTAAGAAGTTTCAGAAAGGGGGTGGAAAGAAGAAATCAAGCCAAACTATTGAGATATATAAAGGAGACACTCTGTGGGGACTATCTCGAAAGTATGGGGTTTCAGTTGAAGCAATCAAAGCTGCAAATGGGTTTACAGATGATACCATCTATGCTGGAGAGAAACTTATACTACCCTGA___TGGGCTTATTGGTTGTGCTTGACGTAACCAATTATGAC

Fln Alignment:

AllPine_a_rep_c109430___PKKPVEESFISEEGVSVSSTENTFEDLKVDTEEKASEVPKAANGVAYDVXXXXXXXXXXXKSSQTIEIYKGDTLWGLSRKYGVSVEAIKAANGFTDDTIYAGEKLILP
A9NYY7________________PKKPVEESFISEEAVSTTSTENIFEDLKVDAEEKASEVPKAANGVAYDVGKKFQKGGGKKKSNQTIEIFKGDTLWGLSRKYGVSVEAIKAANGFSDDTIYAGEKLILP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain