UniGene Name: sp_v3.0_unigene143072
Length: 201 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
---|
>sp_v3.0_unigene143072
C |
Ace file of the UniGene sp_v3.0_unigene143072 (antisense) |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Eukaryotic initiation factor 4A-3 n=2 Tax=Arabidopsis RepID=IF4A3_ARATH | - | - | 4.0e-27 | 92% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 98% |
Sma3 | Dead box ATP-dependent RNA helicase, putative | - | - | 3.817e-09 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides. | EC:3.6.1.- | - | 3.98e-11 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Purine metabolism | 00230 | 3.98e-11 | % | |
Sma3 | Lipopolysaccharide biosynthesis | 00540 | 3.98e-11 | % | |
Sma3 | Folate biosynthesis | 00790 | 3.98e-11 | % | |
Sma3 | Metabolic pathways | 01100 | 3.98e-11 | % |
Source | Gene names |
---|---|
Sma3 | AT1G54270; AT3G13920; At1g51380; At1g54270; At1g72730; At3g13920; At3g19760; B1131G07.20; CHLREDRAFT_188942; CHLREDRAFT_608; DH1; EIF4A; EIF4A3; F11M15.24; F20D21.9; F20D21_52; F28P22.8; F5D21.11; GSVIVT00016530001; GSVIVT00032180001; GSVIVT00034135001; G |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | nucleolus | GO:0005730 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | plant-type cell wall | GO:0009505 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | nucleic acid binding | GO:0003676 | Molecular Function | 0.0 | - |
Sma3 | RNA binding | GO:0003723 | Molecular Function | 0.0 | - |
Sma3 | translation initiation factor activity | GO:0003743 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | ATP-dependent helicase activity | GO:0008026 | Molecular Function | 0.0 | - |
Sma3 | rRNA processing | GO:0006364 | Biological Process | 0.0 | - |
Sma3 | translation | GO:0006412 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | RNA helicase, ATP-dependent, DEAD-box, conserved site | IPR000629 | - | 0.0 | - |
Sma3 | Helicase, C-terminal | IPR001650 | - | 0.0 | - |
Sma3 | WD40 repeat | IPR001680 | - | 0.0 | - |
Sma3 | DNA/RNA helicase, DEAD/DEAH box type, N-terminal | IPR011545 | - | 0.0 | - |
Sma3 | Helicase, superfamily 1/2, ATP-binding domain | IPR014001 | - | 0.0 | - |
Sma3 | RNA helicase, DEAD-box type, Q motif | IPR014014 | - | 0.0 | - |
Sma3 | IPR014021 | - | 0.0 | - | |
Sma3 | WD40/YVTN repeat-like-containing domain | IPR015943 | - | 0.0 | - |
Sma3 | WD40-repeat-containing domain | IPR017986 | - | 0.0 | - |
Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
Sma3 | IPR019782 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G72730.1 | DEA(D/H)-box RNA helicase family protein chr1:27378040-27379593 REVERSE LENGTH=414 | 4.0e-35 | 92% |
RefSeq | Arabidopsis thaliana | NP_177417.1 | translation initiation factor 4A-3 [Arabidopsis thaliana] | 5.0e-35 | 92% |
RefSeq | Populus trichocarpa | XP_002337398.1 | predicted protein, partial [Populus trichocarpa] | 5.0e-35 | 93% |
Full-Lengther Next Prediction |
---|
Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LMF4
Fln msg: Distance to subject end: 165 aas, your sequence is shorter than subject: 66 - 286
Fln protein:
S
Protein Length:
67
Fln nts:
C
Fln Alignment:
AllPine_a_rep_c109420___SIKMFVLDEADEMLSRGFKDQIYDIFQLLPANLQVGVFSATMPPEALEITRKFMNNPVRILVKRDE
B8LMF4________________SIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDE
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain