SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142561

Length: 278 nt

UniGene Fasta

>sp_v3.0_unigene142561
GCGGTCAAGAAGAAACATGGCGTCTATCTCGCTTGTTCTCTTCTTGACCGCGCTTGTTCTCTTATCGACCGTGGCTTGCTCCTTCGGTGATGCAAGTTCGGTTGATGGAATCGCTAGAAGACCTCCCATGGGGTGGAACTCTTGGAATAAATTTGGTTGCGATATCCAACGAGAAAGTAATCAAGGAAACTTGCTGATGCGCTGATCTCAACAGGTTTTAGTGAACTGGGCTATAAATACGTTAATTTAGATGATTGCTGGGCTGAGTACCAGCGAGA

Ace file of the UniGene sp_v3.0_unigene142561

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-galactosidase 1 n=1 Tax=Pisum sativum RepID=Q5ZP79_PEA	-	-	1.0e-12	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08380.1	AtAGAL1, AGAL1 alpha-galactosidase 1 chr5:2694851-2697616 REVERSE LENGTH=410	3.0e-13	64%
RefSeq	Arabidopsis thaliana	NP_196455.1	alpha-galactosidase 1 [Arabidopsis thaliana]	4.0e-13	64%
RefSeq	Populus trichocarpa	XP_002305678.1	predicted protein [Populus trichocarpa]	5.0e-14	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE1

Fln msg: Separated hits, possible frame ERROR between 175 and 184, Distance to subject end: 132 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 87 - 228

Fln protein: MASISLVLFLTALVLLSTVACSFGDASSVDGIARRPPMGWNSWNKFGCDIQRxxxxRKLADALISTGFSELGYKYVNLDDCWAEYQR

Protein Length: 88

Fln nts: GCGGTCAAGAAGAAAC_-_ATGGCGTCTATCTCGCTTGTTCTCTTCTTGACCGCGCTTGTTCTCTTATCGACCGTGGCTTGCTCCTTCGGTGATGCAAGTTCGGTTGATGGAATCGCTAGAAGACCTCCCATGGGGTGGAACTCTTGGAATAAATTTGGTTGCGATATCCAACGAGAxxxxxxxxxAAGGAAACTTGCTGATGCGCTGATCTCAACAGGTTTTAGTGAACTGGGCTATAAATACGTTAATTTAGATGATTGCTGGGCTGAGTACCAGCGAGA

Fln Alignment:

AllPine_a_rep_c107863___DGIARRPPMGWNSWNKFGCDIQRExxxRKLADALISTGFSELGYKYVNLDDCWAEYQR
B8LKE1________________NGLARTPPMGWNSWNHFGCNIDEKxxxRKTADALISTGFKNLGYEYVNIDDCWAEHKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain