SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142310

Length: 495 nt

UniGene Fasta

>sp_v3.0_unigene142310
ATGGGGATGGATATGGCTATTGTGTGGCAGGGAAATGGCTCCAAAAATGAGAGGCCCAAGGTCTCAATCTGTTTATCCGCTAACCTGTAGGGTAGGTAGTATAGAATGAGGAGCAGTGTAGCACTCTCACAGAAAATTGGGCAAGTGGTGGCGTCCATGGCGAAGCCGATTTCGATCGAGGTATGGAATCCTGCAGGGAAACACAGGGTGGTCAGCACCAAATCCATGCCTGGCACCCGTTGGATTCGCCTTCTCACCGATGCAGACTGTCGTCTTGAGATTTGCTCGGAGAAGAAAACTATTTTAGACGTGGAGGACATACAGGCGCTTATTGGTGACAAATGTGACGGAGTAATTGGACAGTTGACAGAGGATTGGGGCGAAACTCTTTTCAGCACCCTCAAACGAGCTGGAGGAACTGCATTTAGTAATATGGCTGTCGGTTACAACAATGTGGATGTGAATGCTGCAAACAAATATGGCATAGCAGTTGGC

Ace file of the UniGene sp_v3.0_unigene142310

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Glycerate dehydrogenase; Short=GDH; AltName: Full=NADH-dependent hydroxypyruvate reductase; Short=HPR emb\|CAA41434.1\| NADH-dependent hydroxypyruvate reductase [Cucumis sativus] emb\|CAA32764.1\| unnamed protein product [Cucumis sativus]	-	-	0.0	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Hydroxypyruvate reductase	-	-	2.297e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glycerate dehydrogenase.	EC:1.1.1.29	-	3.273e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260	3.273e-15	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	3.273e-15	%
Sma3	Methane metabolism	00680	3.273e-15	%
Sma3	Metabolic pathways	01100	3.273e-15	%

Source	Gene names
Sma3	At1g68010; B1370C05.18-1; CHLREDRAFT_128310; GSVIVT00036132001; HPR; HPR-A; HPR1; OJ1435_F07.8-1; Os02g0101500; OsI_05455; OsJ_04992; PHYPADRAFT_173131; PHYPADRAFT_64845; POPTRDRAFT_818203; RCOM_1112510; T23K23.14; VITISV_020147;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glycerate dehydrogenase activity	GO:0008465	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68010.2	-	82%
RefSeq	Arabidopsis thaliana	NP_176968.1	hydroxypyruvate reductase [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002305524.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKT9

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 130 - 386

Fln protein: MRSSVALSQKIGQVVASMAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICSEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDVNAANKYGIAVG

Protein Length: 131

Fln nts: ATGGGGATGGATATGGCTATTGTGTGGCAGGGAAATGGCTCCAAAAATGAGAGGCCCAAGGTCTCAATCTGTTTATCCGCTAACCTGTAGGGTAGGTAGTATAGA_-_ATGAGGAGCAGTGTAGCACTCTCACAGAAAATTGGGCAAGTGGTGGCGTCCATGGCGAAGCCGATTTCGATCGAGGTATGGAATCCTGCAGGGAAACACAGGGTGGTCAGCACCAAATCCATGCCTGGCACCCGTTGGATTCGCCTTCTCACCGATGCAGACTGTCGTCTTGAGATTTGCTCGGAGAAGAAAACTATTTTAGACGTGGAGGACATACAGGCGCTTATTGGTGACAAATGTGACGGAGTAATTGGACAGTTGACAGAGGATTGGGGCGAAACTCTTTTCAGCACCCTCAAACGAGCTGGAGGAACTGCATTTAGTAATATGGCTGTCGGTTACAACAATGTGGATGTGAATGCTGCAAACAAATATGGCATAGCAGTTGGC

Fln Alignment:

AllPine_a_rep_c106541___MAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICSEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDVNAANKYGIAVG
A9NKT9________________MAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICTEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDLNAANTYGIAVG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
29		66	33		1.0
230		90	10		0.90298
231	90			10	0.90298
235		90	10		0.90298
236	10	90			0.90298
237	10			90	0.90298
240		90	10		0.90298
243		90		10	0.90298
246	10		90		0.90298
247	10			90	0.90298
248		10		90	0.90298
251	90		10		0.90298
317	12		87		0.992554
318		12		87	0.992554
319	12		87		0.992554
320			87	12	0.992554
321	87			12	0.992554
371		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain